Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3236 and Atu3237 are separated by 17 nucleotides Atu3237 and Atu3238 overlap by 8 nucleotides Atu3238 and Atu3239 are separated by 71 nucleotides
Atu3236: Atu3236 - sugar ABC transporter ATPase, at 252,535 to 253,608
Atu3236
Atu3237: Atu3237 - sugar ABC transporter permease, at 253,626 to 254,474
Atu3237
Atu3238: Atu3238 - sugar ABC transporter permease, at 254,467 to 255,399
Atu3238
Atu3239: Atu3239 - sugar ABC transporter substrate-binding protein, at 255,471 to 256,772
Atu3239
Position (kb) 254
255
256 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 253.474 kb on - strand, within Atu3236 at 253.584 kb on - strand at 253.688 kb on - strand at 253.766 kb on + strand, within Atu3237 at 253.892 kb on + strand, within Atu3237 at 254.074 kb on + strand, within Atu3237 at 254.165 kb on + strand, within Atu3237 at 254.175 kb on + strand, within Atu3237 at 254.212 kb on - strand, within Atu3237 at 254.271 kb on + strand, within Atu3237 at 254.431 kb on - strand at 254.463 kb on - strand at 254.468 kb on + strand at 254.582 kb on + strand, within Atu3238 at 254.590 kb on - strand, within Atu3238 at 254.590 kb on - strand, within Atu3238 at 254.597 kb on + strand, within Atu3238 at 254.674 kb on - strand, within Atu3238 at 254.702 kb on - strand, within Atu3238 at 254.711 kb on + strand, within Atu3238 at 254.729 kb on - strand, within Atu3238 at 254.847 kb on + strand, within Atu3238 at 254.862 kb on + strand, within Atu3238 at 254.870 kb on - strand, within Atu3238 at 255.110 kb on - strand, within Atu3238 at 255.224 kb on + strand, within Atu3238 at 255.224 kb on + strand, within Atu3238 at 255.224 kb on + strand, within Atu3238 at 255.227 kb on - strand, within Atu3238 at 255.477 kb on - strand at 255.477 kb on - strand at 255.477 kb on - strand at 255.479 kb on + strand at 255.487 kb on - strand at 255.580 kb on - strand at 255.635 kb on - strand, within Atu3239 at 255.662 kb on - strand, within Atu3239 at 255.721 kb on + strand, within Atu3239 at 255.793 kb on - strand, within Atu3239 at 255.919 kb on - strand, within Atu3239 at 255.977 kb on + strand, within Atu3239 at 256.054 kb on - strand, within Atu3239 at 256.059 kb on - strand, within Atu3239 at 256.070 kb on - strand, within Atu3239 at 256.083 kb on + strand, within Atu3239 at 256.136 kb on - strand, within Atu3239 at 256.170 kb on - strand, within Atu3239 at 256.215 kb on - strand, within Atu3239 at 256.245 kb on + strand, within Atu3239 at 256.263 kb on - strand, within Atu3239 at 256.328 kb on + strand, within Atu3239 at 256.333 kb on + strand, within Atu3239 at 256.333 kb on + strand, within Atu3239 at 256.333 kb on + strand, within Atu3239 at 256.333 kb on + strand, within Atu3239 at 256.333 kb on + strand, within Atu3239 at 256.333 kb on + strand, within Atu3239 at 256.333 kb on + strand, within Atu3239 at 256.341 kb on - strand, within Atu3239 at 256.341 kb on - strand, within Atu3239 at 256.341 kb on - strand, within Atu3239 at 256.341 kb on - strand, within Atu3239 at 256.341 kb on - strand, within Atu3239 at 256.378 kb on + strand, within Atu3239 at 256.384 kb on + strand, within Atu3239
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 253,474 - Atu3236 0.87 -0.8 253,584 - -0.3 253,688 - +0.3 253,766 + Atu3237 0.16 +0.7 253,892 + Atu3237 0.31 -2.0 254,074 + Atu3237 0.53 -3.2 254,165 + Atu3237 0.63 -0.5 254,175 + Atu3237 0.65 -0.2 254,212 - Atu3237 0.69 +0.7 254,271 + Atu3237 0.76 +0.9 254,431 - +0.3 254,463 - -0.5 254,468 + +0.1 254,582 + Atu3238 0.12 +1.1 254,590 - Atu3238 0.13 +1.9 254,590 - Atu3238 0.13 -0.9 254,597 + Atu3238 0.14 -2.4 254,674 - Atu3238 0.22 -0.3 254,702 - Atu3238 0.25 +0.0 254,711 + Atu3238 0.26 +0.8 254,729 - Atu3238 0.28 -2.3 254,847 + Atu3238 0.41 +0.3 254,862 + Atu3238 0.42 +3.0 254,870 - Atu3238 0.43 +1.3 255,110 - Atu3238 0.69 -0.8 255,224 + Atu3238 0.81 +0.1 255,224 + Atu3238 0.81 +1.7 255,224 + Atu3238 0.81 +0.2 255,227 - Atu3238 0.81 +0.4 255,477 - -0.3 255,477 - -2.7 255,477 - +1.4 255,479 + -0.1 255,487 - -0.3 255,580 - -0.5 255,635 - Atu3239 0.13 +0.9 255,662 - Atu3239 0.15 +0.9 255,721 + Atu3239 0.19 +2.9 255,793 - Atu3239 0.25 +0.5 255,919 - Atu3239 0.34 -0.5 255,977 + Atu3239 0.39 -2.2 256,054 - Atu3239 0.45 -0.3 256,059 - Atu3239 0.45 +0.2 256,070 - Atu3239 0.46 +1.3 256,083 + Atu3239 0.47 -1.0 256,136 - Atu3239 0.51 +0.5 256,170 - Atu3239 0.54 +0.6 256,215 - Atu3239 0.57 -0.7 256,245 + Atu3239 0.59 -0.1 256,263 - Atu3239 0.61 +0.1 256,328 + Atu3239 0.66 +1.0 256,333 + Atu3239 0.66 +0.1 256,333 + Atu3239 0.66 +1.1 256,333 + Atu3239 0.66 -1.2 256,333 + Atu3239 0.66 +1.5 256,333 + Atu3239 0.66 +0.0 256,333 + Atu3239 0.66 -1.2 256,333 + Atu3239 0.66 -0.2 256,341 - Atu3239 0.67 -1.1 256,341 - Atu3239 0.67 -0.4 256,341 - Atu3239 0.67 +0.7 256,341 - Atu3239 0.67 -1.6 256,341 - Atu3239 0.67 -2.3 256,378 + Atu3239 0.70 -1.2 256,384 + Atu3239 0.70 -0.1
Or see this region's nucleotide sequence