Strain Fitness in Agrobacterium fabrum C58 around Atu3056

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3055 and Atu3056 are separated by 44 nucleotidesAtu3056 and Atu3057 are separated by 131 nucleotides Atu3055: Atu3055 - hypothetical protein, at 53,535 to 54,800 Atu3055 Atu3056: Atu3056 - beta 1,3 glucan synthase catalytic subunit, at 54,845 to 56,809 Atu3056 Atu3057: Atu3057 - hypothetical protein, at 56,941 to 58,398 Atu3057 Position (kb) 54 55 56 57Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 53.872 kb on + strand, within Atu3055at 53.940 kb on - strand, within Atu3055at 54.063 kb on + strand, within Atu3055at 54.063 kb on + strand, within Atu3055at 54.071 kb on - strand, within Atu3055at 54.076 kb on + strand, within Atu3055at 54.170 kb on - strand, within Atu3055at 54.187 kb on + strand, within Atu3055at 54.281 kb on - strand, within Atu3055at 54.314 kb on + strand, within Atu3055at 54.351 kb on - strand, within Atu3055at 54.409 kb on + strand, within Atu3055at 54.412 kb on - strand, within Atu3055at 54.415 kb on - strand, within Atu3055at 54.464 kb on + strand, within Atu3055at 54.483 kb on - strand, within Atu3055at 54.505 kb on + strand, within Atu3055at 54.534 kb on - strand, within Atu3055at 54.589 kb on + strand, within Atu3055at 54.589 kb on + strand, within Atu3055at 54.676 kb on - strandat 54.698 kb on + strandat 54.710 kb on + strandat 55.003 kb on + strandat 55.003 kb on + strandat 55.003 kb on + strandat 55.011 kb on - strandat 55.021 kb on - strandat 55.110 kb on - strand, within Atu3056at 55.117 kb on - strand, within Atu3056at 55.255 kb on + strand, within Atu3056at 55.260 kb on + strand, within Atu3056at 55.269 kb on + strand, within Atu3056at 55.300 kb on - strand, within Atu3056at 55.312 kb on + strand, within Atu3056at 55.334 kb on - strand, within Atu3056at 55.440 kb on - strand, within Atu3056at 55.466 kb on + strand, within Atu3056at 55.480 kb on + strand, within Atu3056at 55.492 kb on + strand, within Atu3056at 55.550 kb on - strand, within Atu3056at 55.575 kb on - strand, within Atu3056at 55.576 kb on + strand, within Atu3056at 55.583 kb on + strand, within Atu3056at 55.666 kb on + strand, within Atu3056at 55.800 kb on - strand, within Atu3056at 55.813 kb on - strand, within Atu3056at 56.229 kb on + strand, within Atu3056at 56.229 kb on + strand, within Atu3056at 56.237 kb on - strand, within Atu3056at 56.237 kb on - strand, within Atu3056at 56.302 kb on - strand, within Atu3056at 56.319 kb on + strand, within Atu3056at 56.319 kb on + strand, within Atu3056at 56.319 kb on + strand, within Atu3056at 56.319 kb on + strand, within Atu3056at 56.319 kb on + strand, within Atu3056at 56.327 kb on - strand, within Atu3056at 56.327 kb on - strand, within Atu3056at 56.327 kb on - strand, within Atu3056at 56.373 kb on - strand, within Atu3056at 56.384 kb on - strand, within Atu3056at 56.433 kb on + strand, within Atu3056at 56.478 kb on + strand, within Atu3056at 56.486 kb on - strand, within Atu3056at 56.538 kb on - strand, within Atu3056at 56.558 kb on - strand, within Atu3056at 56.558 kb on - strand, within Atu3056at 56.576 kb on + strand, within Atu3056at 56.720 kb on + strandat 56.754 kb on + strandat 56.819 kb on - strandat 56.819 kb on - strandat 56.857 kb on + strandat 56.904 kb on + strandat 56.904 kb on - strandat 56.912 kb on - strandat 56.930 kb on - strandat 56.944 kb on + strandat 56.985 kb on - strandat 56.994 kb on + strandat 57.024 kb on - strandat 57.039 kb on - strandat 57.176 kb on - strand, within Atu3057at 57.225 kb on + strand, within Atu3057at 57.234 kb on - strand, within Atu3057at 57.237 kb on + strand, within Atu3057at 57.285 kb on - strand, within Atu3057at 57.290 kb on - strand, within Atu3057at 57.295 kb on - strand, within Atu3057at 57.345 kb on - strand, within Atu3057at 57.347 kb on + strand, within Atu3057at 57.371 kb on + strand, within Atu3057at 57.374 kb on - strand, within Atu3057at 57.381 kb on + strand, within Atu3057at 57.388 kb on + strand, within Atu3057at 57.396 kb on - strand, within Atu3057at 57.409 kb on + strand, within Atu3057at 57.417 kb on - strand, within Atu3057at 57.417 kb on - strand, within Atu3057at 57.455 kb on - strand, within Atu3057at 57.500 kb on - strand, within Atu3057at 57.569 kb on + strand, within Atu3057at 57.569 kb on + strand, within Atu3057at 57.569 kb on + strand, within Atu3057at 57.569 kb on + strand, within Atu3057at 57.569 kb on + strand, within Atu3057at 57.569 kb on + strand, within Atu3057at 57.569 kb on + strand, within Atu3057at 57.577 kb on - strand, within Atu3057at 57.577 kb on - strand, within Atu3057at 57.577 kb on - strand, within Atu3057at 57.577 kb on - strand, within Atu3057at 57.711 kb on + strand, within Atu3057at 57.781 kb on - strand, within Atu3057

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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53,872 + Atu3055 0.27 -2.7
53,940 - Atu3055 0.32 -0.7
54,063 + Atu3055 0.42 +0.7
54,063 + Atu3055 0.42 +0.8
54,071 - Atu3055 0.42 -0.3
54,076 + Atu3055 0.43 -1.4
54,170 - Atu3055 0.50 +0.3
54,187 + Atu3055 0.52 -0.9
54,281 - Atu3055 0.59 -0.7
54,314 + Atu3055 0.62 -1.4
54,351 - Atu3055 0.64 -0.1
54,409 + Atu3055 0.69 -2.8
54,412 - Atu3055 0.69 +4.5
54,415 - Atu3055 0.70 +1.9
54,464 + Atu3055 0.73 -0.7
54,483 - Atu3055 0.75 -2.9
54,505 + Atu3055 0.77 -2.9
54,534 - Atu3055 0.79 -1.1
54,589 + Atu3055 0.83 -1.3
54,589 + Atu3055 0.83 +1.0
54,676 - +4.2
54,698 + -0.1
54,710 + -1.8
55,003 + -0.2
55,003 + -1.0
55,003 + +2.7
55,011 - -1.1
55,021 - +0.5
55,110 - Atu3056 0.13 -1.4
55,117 - Atu3056 0.14 -0.2
55,255 + Atu3056 0.21 -0.1
55,260 + Atu3056 0.21 -1.3
55,269 + Atu3056 0.22 -3.9
55,300 - Atu3056 0.23 +1.5
55,312 + Atu3056 0.24 -0.1
55,334 - Atu3056 0.25 +1.0
55,440 - Atu3056 0.30 +0.4
55,466 + Atu3056 0.32 -0.5
55,480 + Atu3056 0.32 -0.2
55,492 + Atu3056 0.33 -0.5
55,550 - Atu3056 0.36 -0.6
55,575 - Atu3056 0.37 -2.3
55,576 + Atu3056 0.37 +0.1
55,583 + Atu3056 0.38 -1.2
55,666 + Atu3056 0.42 -0.9
55,800 - Atu3056 0.49 +0.7
55,813 - Atu3056 0.49 -0.4
56,229 + Atu3056 0.70 +1.8
56,229 + Atu3056 0.70 +0.2
56,237 - Atu3056 0.71 +1.7
56,237 - Atu3056 0.71 -0.9
56,302 - Atu3056 0.74 +0.5
56,319 + Atu3056 0.75 -0.3
56,319 + Atu3056 0.75 -0.9
56,319 + Atu3056 0.75 -0.5
56,319 + Atu3056 0.75 -0.2
56,319 + Atu3056 0.75 -0.5
56,327 - Atu3056 0.75 -0.2
56,327 - Atu3056 0.75 +0.2
56,327 - Atu3056 0.75 -2.1
56,373 - Atu3056 0.78 -1.0
56,384 - Atu3056 0.78 -1.3
56,433 + Atu3056 0.81 +0.0
56,478 + Atu3056 0.83 -0.1
56,486 - Atu3056 0.84 +1.2
56,538 - Atu3056 0.86 +3.7
56,558 - Atu3056 0.87 -0.2
56,558 - Atu3056 0.87 -1.2
56,576 + Atu3056 0.88 +1.6
56,720 + +0.2
56,754 + +0.6
56,819 - -0.9
56,819 - -1.7
56,857 + +0.9
56,904 + +0.7
56,904 - -0.2
56,912 - +0.1
56,930 - +0.0
56,944 + +0.2
56,985 - -0.4
56,994 + -1.1
57,024 - -0.1
57,039 - +0.3
57,176 - Atu3057 0.16 +1.6
57,225 + Atu3057 0.19 +0.3
57,234 - Atu3057 0.20 -0.8
57,237 + Atu3057 0.20 +1.3
57,285 - Atu3057 0.24 +0.0
57,290 - Atu3057 0.24 -2.6
57,295 - Atu3057 0.24 -0.1
57,345 - Atu3057 0.28 -0.9
57,347 + Atu3057 0.28 -0.2
57,371 + Atu3057 0.29 +0.8
57,374 - Atu3057 0.30 -0.6
57,381 + Atu3057 0.30 +1.4
57,388 + Atu3057 0.31 -1.1
57,396 - Atu3057 0.31 +1.8
57,409 + Atu3057 0.32 -0.5
57,417 - Atu3057 0.33 +0.0
57,417 - Atu3057 0.33 +0.3
57,455 - Atu3057 0.35 +0.4
57,500 - Atu3057 0.38 +0.5
57,569 + Atu3057 0.43 -0.1
57,569 + Atu3057 0.43 -0.1
57,569 + Atu3057 0.43 -0.9
57,569 + Atu3057 0.43 +0.9
57,569 + Atu3057 0.43 +0.4
57,569 + Atu3057 0.43 +0.7
57,569 + Atu3057 0.43 +2.3
57,577 - Atu3057 0.44 +0.1
57,577 - Atu3057 0.44 +0.9
57,577 - Atu3057 0.44 +2.3
57,577 - Atu3057 0.44 -2.3
57,711 + Atu3057 0.53 +0.9
57,781 - Atu3057 0.58 -0.0

Or see this region's nucleotide sequence