Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8141 and Atu0964 are separated by 60 nucleotides Atu0964 and Atu0965 overlap by 4 nucleotides Atu0965 and Atu0966 overlap by 4 nucleotides Atu0966 and Atu0967 are separated by 17 nucleotides
Atu8141: Atu8141 - hypothetical protein, at 951,713 to 952,294
Atu8141
Atu0964: Atu0964 - hypothetical protein, at 952,355 to 952,993
Atu0964
Atu0965: Atu0965 - hypothetical protein, at 952,990 to 953,874
Atu0965
Atu0966: Atu0966 - hypothetical protein, at 953,871 to 954,305
Atu0966
Atu0967: Atu0967 - hypothetical protein, at 954,323 to 958,123
Atu0967
Position (kb) 952
953
954 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 952.036 kb on + strand, within Atu8141 at 952.041 kb on + strand, within Atu8141 at 952.044 kb on - strand, within Atu8141 at 952.088 kb on - strand, within Atu8141 at 952.098 kb on - strand, within Atu8141 at 952.145 kb on + strand, within Atu8141 at 952.163 kb on + strand, within Atu8141 at 952.171 kb on - strand, within Atu8141 at 952.248 kb on + strand at 952.315 kb on + strand at 952.322 kb on - strand at 952.328 kb on - strand at 952.469 kb on - strand, within Atu0964 at 952.573 kb on + strand, within Atu0964 at 952.573 kb on + strand, within Atu0964 at 952.573 kb on + strand, within Atu0964 at 952.694 kb on + strand, within Atu0964 at 952.701 kb on - strand, within Atu0964 at 952.702 kb on - strand, within Atu0964 at 952.754 kb on + strand, within Atu0964 at 952.788 kb on - strand, within Atu0964 at 952.837 kb on - strand, within Atu0964 at 953.010 kb on - strand at 953.066 kb on + strand at 953.328 kb on - strand, within Atu0965 at 953.390 kb on + strand, within Atu0965 at 953.393 kb on - strand, within Atu0965 at 953.398 kb on - strand, within Atu0965 at 953.398 kb on - strand, within Atu0965 at 953.402 kb on + strand, within Atu0965 at 953.410 kb on - strand, within Atu0965 at 953.426 kb on - strand, within Atu0965 at 953.426 kb on - strand, within Atu0965 at 953.489 kb on + strand, within Atu0965 at 953.586 kb on + strand, within Atu0965 at 953.799 kb on + strand at 953.900 kb on - strand at 954.128 kb on + strand, within Atu0966 at 954.136 kb on - strand, within Atu0966 at 954.217 kb on + strand, within Atu0966 at 954.433 kb on - strand at 954.450 kb on - strand at 954.468 kb on - strand at 954.475 kb on + strand at 954.475 kb on + strand at 954.475 kb on + strand at 954.552 kb on - strand at 954.559 kb on + strand at 954.559 kb on + strand at 954.559 kb on + strand at 954.563 kb on - strand at 954.567 kb on - strand at 954.593 kb on - strand at 954.601 kb on - strand at 954.613 kb on + strand at 954.624 kb on + strand at 954.632 kb on - strand at 954.771 kb on + strand, within Atu0967 at 954.803 kb on - strand, within Atu0967 at 954.838 kb on + strand, within Atu0967 at 954.838 kb on + strand, within Atu0967
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 952,036 + Atu8141 0.55 +3.0 952,041 + Atu8141 0.56 +0.5 952,044 - Atu8141 0.57 +0.2 952,088 - Atu8141 0.64 +2.5 952,098 - Atu8141 0.66 -0.8 952,145 + Atu8141 0.74 -0.2 952,163 + Atu8141 0.77 +1.0 952,171 - Atu8141 0.79 -0.3 952,248 + -2.2 952,315 + -0.3 952,322 - -0.7 952,328 - -0.7 952,469 - Atu0964 0.18 -0.4 952,573 + Atu0964 0.34 +0.1 952,573 + Atu0964 0.34 +1.3 952,573 + Atu0964 0.34 +1.2 952,694 + Atu0964 0.53 -1.0 952,701 - Atu0964 0.54 -0.2 952,702 - Atu0964 0.54 -0.5 952,754 + Atu0964 0.62 -0.6 952,788 - Atu0964 0.68 -1.3 952,837 - Atu0964 0.75 +0.9 953,010 - +1.8 953,066 + +0.6 953,328 - Atu0965 0.38 +0.3 953,390 + Atu0965 0.45 +0.6 953,393 - Atu0965 0.46 -0.8 953,398 - Atu0965 0.46 +0.3 953,398 - Atu0965 0.46 +0.7 953,402 + Atu0965 0.47 +0.8 953,410 - Atu0965 0.47 +3.7 953,426 - Atu0965 0.49 -1.8 953,426 - Atu0965 0.49 +1.4 953,489 + Atu0965 0.56 -0.7 953,586 + Atu0965 0.67 -1.4 953,799 + -1.3 953,900 - -0.0 954,128 + Atu0966 0.59 -0.6 954,136 - Atu0966 0.61 +0.7 954,217 + Atu0966 0.80 -0.8 954,433 - +1.4 954,450 - +0.1 954,468 - +0.5 954,475 + +0.8 954,475 + +1.8 954,475 + +1.7 954,552 - +1.0 954,559 + +3.0 954,559 + -1.4 954,559 + +2.1 954,563 - +0.4 954,567 - +1.0 954,593 - -2.4 954,601 - -0.7 954,613 + +0.5 954,624 + -1.1 954,632 - -0.4 954,771 + Atu0967 0.12 -0.8 954,803 - Atu0967 0.13 -0.3 954,838 + Atu0967 0.14 -0.0 954,838 + Atu0967 0.14 -1.2
Or see this region's nucleotide sequence