Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0930 and Atu0931 are separated by 345 nucleotides Atu0931 and Atu0932 are separated by 178 nucleotides Atu0932 and Atu0933 are separated by 111 nucleotides
Atu0930: Atu0930 - hypothetical protein, at 918,455 to 919,900
Atu0930
Atu0931: Atu0931 - penicillin binding protein, at 920,246 to 922,519
Atu0931
Atu0932: Atu0932 - hypothetical protein, at 922,698 to 923,177
Atu0932
Atu0933: Atu0933 - beta-lactamase class D, at 923,289 to 924,113
Atu0933
Position (kb) 920
921
922
923 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 919.246 kb on - strand, within Atu0930 at 919.246 kb on - strand, within Atu0930 at 919.246 kb on - strand, within Atu0930 at 919.325 kb on + strand, within Atu0930 at 919.402 kb on + strand, within Atu0930 at 919.448 kb on - strand, within Atu0930 at 919.493 kb on - strand, within Atu0930 at 919.504 kb on + strand, within Atu0930 at 919.504 kb on + strand, within Atu0930 at 919.512 kb on - strand, within Atu0930 at 919.512 kb on - strand, within Atu0930 at 919.512 kb on - strand, within Atu0930 at 919.512 kb on - strand, within Atu0930 at 919.602 kb on - strand, within Atu0930 at 919.658 kb on + strand, within Atu0930 at 919.667 kb on - strand, within Atu0930 at 919.699 kb on + strand, within Atu0930 at 919.707 kb on - strand, within Atu0930 at 919.766 kb on - strand at 919.802 kb on - strand at 919.819 kb on - strand at 920.093 kb on - strand at 920.162 kb on - strand at 920.170 kb on - strand at 920.246 kb on - strand at 920.249 kb on - strand at 920.401 kb on - strand at 920.426 kb on - strand at 920.518 kb on + strand, within Atu0931 at 920.591 kb on + strand, within Atu0931 at 920.627 kb on - strand, within Atu0931 at 920.700 kb on + strand, within Atu0931 at 920.708 kb on - strand, within Atu0931 at 920.910 kb on + strand, within Atu0931 at 920.910 kb on - strand, within Atu0931 at 920.953 kb on + strand, within Atu0931 at 920.996 kb on - strand, within Atu0931 at 921.041 kb on - strand, within Atu0931 at 921.214 kb on - strand, within Atu0931 at 921.215 kb on - strand, within Atu0931 at 921.215 kb on - strand, within Atu0931 at 921.215 kb on - strand, within Atu0931 at 921.304 kb on + strand, within Atu0931 at 921.447 kb on + strand, within Atu0931 at 921.455 kb on - strand, within Atu0931 at 921.497 kb on + strand, within Atu0931 at 921.626 kb on - strand, within Atu0931 at 921.626 kb on - strand, within Atu0931 at 921.675 kb on + strand, within Atu0931 at 921.675 kb on + strand, within Atu0931 at 922.012 kb on + strand, within Atu0931 at 922.042 kb on + strand, within Atu0931 at 922.045 kb on - strand, within Atu0931 at 922.113 kb on + strand, within Atu0931 at 922.167 kb on + strand, within Atu0931 at 922.209 kb on + strand, within Atu0931 at 922.241 kb on + strand, within Atu0931 at 922.313 kb on + strand at 922.360 kb on + strand at 922.450 kb on + strand at 922.645 kb on - strand at 922.646 kb on - strand at 922.658 kb on - strand at 922.832 kb on - strand, within Atu0932 at 922.832 kb on - strand, within Atu0932 at 922.842 kb on - strand, within Atu0932 at 922.915 kb on + strand, within Atu0932 at 922.931 kb on + strand, within Atu0932 at 922.998 kb on + strand, within Atu0932 at 923.011 kb on + strand, within Atu0932 at 923.043 kb on + strand, within Atu0932 at 923.043 kb on + strand, within Atu0932 at 923.096 kb on - strand, within Atu0932 at 923.146 kb on + strand at 923.396 kb on + strand, within Atu0933 at 923.440 kb on + strand, within Atu0933
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 919,246 - Atu0930 0.55 -1.8 919,246 - Atu0930 0.55 -0.1 919,246 - Atu0930 0.55 -0.8 919,325 + Atu0930 0.60 -0.5 919,402 + Atu0930 0.65 -0.4 919,448 - Atu0930 0.69 +0.6 919,493 - Atu0930 0.72 +0.1 919,504 + Atu0930 0.73 +0.5 919,504 + Atu0930 0.73 -0.7 919,512 - Atu0930 0.73 -0.7 919,512 - Atu0930 0.73 +0.1 919,512 - Atu0930 0.73 +1.6 919,512 - Atu0930 0.73 -1.3 919,602 - Atu0930 0.79 +2.5 919,658 + Atu0930 0.83 +0.6 919,667 - Atu0930 0.84 +0.4 919,699 + Atu0930 0.86 +0.3 919,707 - Atu0930 0.87 -0.9 919,766 - +0.6 919,802 - +0.1 919,819 - +0.5 920,093 - -1.4 920,162 - +1.4 920,170 - -2.0 920,246 - +0.8 920,249 - -1.2 920,401 - +2.9 920,426 - +3.8 920,518 + Atu0931 0.12 -1.6 920,591 + Atu0931 0.15 -1.2 920,627 - Atu0931 0.17 -0.8 920,700 + Atu0931 0.20 +3.9 920,708 - Atu0931 0.20 -0.4 920,910 + Atu0931 0.29 +0.2 920,910 - Atu0931 0.29 -2.7 920,953 + Atu0931 0.31 -0.5 920,996 - Atu0931 0.33 +1.1 921,041 - Atu0931 0.35 -1.0 921,214 - Atu0931 0.43 -0.8 921,215 - Atu0931 0.43 +0.3 921,215 - Atu0931 0.43 -0.1 921,215 - Atu0931 0.43 -0.1 921,304 + Atu0931 0.47 -2.7 921,447 + Atu0931 0.53 -1.8 921,455 - Atu0931 0.53 -0.9 921,497 + Atu0931 0.55 -3.6 921,626 - Atu0931 0.61 -3.1 921,626 - Atu0931 0.61 -2.2 921,675 + Atu0931 0.63 -2.4 921,675 + Atu0931 0.63 -2.7 922,012 + Atu0931 0.78 +0.9 922,042 + Atu0931 0.79 +0.4 922,045 - Atu0931 0.79 -0.4 922,113 + Atu0931 0.82 -2.8 922,167 + Atu0931 0.84 -0.4 922,209 + Atu0931 0.86 -1.8 922,241 + Atu0931 0.88 -0.1 922,313 + +2.7 922,360 + -2.7 922,450 + +0.3 922,645 - +1.8 922,646 - -0.2 922,658 - +0.4 922,832 - Atu0932 0.28 -0.9 922,832 - Atu0932 0.28 +1.1 922,842 - Atu0932 0.30 -0.4 922,915 + Atu0932 0.45 +1.9 922,931 + Atu0932 0.49 -0.5 922,998 + Atu0932 0.62 +2.4 923,011 + Atu0932 0.65 +0.3 923,043 + Atu0932 0.72 +0.6 923,043 + Atu0932 0.72 -1.1 923,096 - Atu0932 0.83 +1.4 923,146 + +0.1 923,396 + Atu0933 0.13 +0.8 923,440 + Atu0933 0.18 +0.0
Or see this region's nucleotide sequence