Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0925 and Atu0926 overlap by 8 nucleotides Atu0926 and Atu0927 are separated by 123 nucleotides Atu0927 and Atu0928 are separated by 374 nucleotides
Atu0925: Atu0925 - hypothetical protein, at 913,645 to 914,193
Atu0925
Atu0926: Atu0926 - hypothetical protein, at 914,186 to 914,773
Atu0926
Atu0927: Atu0927 - LysE family transporter, at 914,897 to 915,505
Atu0927
Atu0928: Atu0928 - transcriptional regulator, LysR family, at 915,880 to 916,785
Atu0928
Position (kb) 914
915
916 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 913.900 kb on - strand, within Atu0925 at 914.086 kb on + strand, within Atu0925 at 914.185 kb on - strand at 914.247 kb on - strand, within Atu0926 at 914.380 kb on - strand, within Atu0926 at 914.427 kb on + strand, within Atu0926 at 914.435 kb on - strand, within Atu0926 at 914.531 kb on + strand, within Atu0926 at 914.554 kb on + strand, within Atu0926 at 914.576 kb on - strand, within Atu0926 at 914.605 kb on - strand, within Atu0926 at 914.842 kb on + strand at 914.852 kb on + strand at 914.904 kb on + strand at 914.912 kb on - strand at 914.933 kb on - strand at 914.971 kb on - strand, within Atu0927 at 915.009 kb on + strand, within Atu0927 at 915.009 kb on + strand, within Atu0927 at 915.009 kb on + strand, within Atu0927 at 915.017 kb on - strand, within Atu0927 at 915.017 kb on - strand, within Atu0927 at 915.017 kb on - strand, within Atu0927 at 915.112 kb on - strand, within Atu0927 at 915.201 kb on + strand, within Atu0927 at 915.219 kb on + strand, within Atu0927 at 915.222 kb on - strand, within Atu0927 at 915.227 kb on - strand, within Atu0927 at 915.229 kb on + strand, within Atu0927 at 915.356 kb on - strand, within Atu0927 at 915.362 kb on + strand, within Atu0927 at 915.600 kb on - strand at 915.690 kb on - strand at 915.692 kb on - strand at 915.803 kb on + strand at 915.826 kb on - strand at 916.078 kb on + strand, within Atu0928 at 916.340 kb on - strand, within Atu0928 at 916.347 kb on + strand, within Atu0928 at 916.355 kb on + strand, within Atu0928 at 916.355 kb on + strand, within Atu0928 at 916.363 kb on - strand, within Atu0928 at 916.444 kb on + strand, within Atu0928 at 916.469 kb on + strand, within Atu0928 at 916.503 kb on + strand, within Atu0928 at 916.503 kb on + strand, within Atu0928
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 913,900 - Atu0925 0.46 -1.0 914,086 + Atu0925 0.80 -0.2 914,185 - +1.0 914,247 - Atu0926 0.10 -1.9 914,380 - Atu0926 0.33 +2.0 914,427 + Atu0926 0.41 +0.9 914,435 - Atu0926 0.42 -3.0 914,531 + Atu0926 0.59 +0.4 914,554 + Atu0926 0.63 -1.2 914,576 - Atu0926 0.66 -0.8 914,605 - Atu0926 0.71 +0.0 914,842 + -0.3 914,852 + -0.2 914,904 + +1.0 914,912 - -1.1 914,933 - +0.4 914,971 - Atu0927 0.12 +0.9 915,009 + Atu0927 0.18 +0.1 915,009 + Atu0927 0.18 +0.7 915,009 + Atu0927 0.18 +0.6 915,017 - Atu0927 0.20 +0.4 915,017 - Atu0927 0.20 -0.0 915,017 - Atu0927 0.20 +3.5 915,112 - Atu0927 0.35 +0.1 915,201 + Atu0927 0.50 -0.4 915,219 + Atu0927 0.53 +0.5 915,222 - Atu0927 0.53 -0.2 915,227 - Atu0927 0.54 -0.1 915,229 + Atu0927 0.55 +1.8 915,356 - Atu0927 0.75 -0.9 915,362 + Atu0927 0.76 -0.7 915,600 - +1.9 915,690 - +0.1 915,692 - -2.4 915,803 + -0.2 915,826 - +0.1 916,078 + Atu0928 0.22 -0.4 916,340 - Atu0928 0.51 -0.5 916,347 + Atu0928 0.52 +0.5 916,355 + Atu0928 0.52 +0.7 916,355 + Atu0928 0.52 -0.3 916,363 - Atu0928 0.53 +1.6 916,444 + Atu0928 0.62 -1.0 916,469 + Atu0928 0.65 -1.6 916,503 + Atu0928 0.69 +1.1 916,503 + Atu0928 0.69 -1.1
Or see this region's nucleotide sequence