Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0847 and Atu0848 are separated by 109 nucleotides Atu0848 and Atu0849 are separated by 61 nucleotides Atu0849 and Atu0850 are separated by 23 nucleotides
Atu0847: Atu0847 - organic hydroperoxide resistance protein, at 848,853 to 849,275
Atu0847
Atu0848: Atu0848 - hypothetical protein, at 849,385 to 849,768
Atu0848
Atu0849: Atu0849 - hypothetical protein, at 849,830 to 850,489
Atu0849
Atu0850: Atu0850 - ABC transporter, nucleotide binding/ATPase protein, at 850,513 to 851,874
Atu0850
Position (kb) 849
850
851 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 848.842 kb on - strand at 848.863 kb on - strand at 848.869 kb on + strand at 848.870 kb on - strand at 848.912 kb on + strand, within Atu0847 at 848.937 kb on + strand, within Atu0847 at 849.016 kb on - strand, within Atu0847 at 849.035 kb on + strand, within Atu0847 at 849.051 kb on + strand, within Atu0847 at 849.062 kb on + strand, within Atu0847 at 849.077 kb on + strand, within Atu0847 at 849.077 kb on + strand, within Atu0847 at 849.111 kb on - strand, within Atu0847 at 849.111 kb on - strand, within Atu0847 at 849.148 kb on + strand, within Atu0847 at 849.237 kb on - strand at 849.247 kb on + strand at 849.247 kb on - strand at 849.298 kb on + strand at 849.415 kb on - strand at 849.475 kb on - strand, within Atu0848 at 849.846 kb on - strand at 850.134 kb on + strand, within Atu0849 at 850.175 kb on + strand, within Atu0849 at 850.183 kb on - strand, within Atu0849 at 850.239 kb on - strand, within Atu0849 at 850.255 kb on + strand, within Atu0849 at 850.273 kb on + strand, within Atu0849 at 850.328 kb on + strand, within Atu0849 at 850.328 kb on + strand, within Atu0849 at 850.336 kb on - strand, within Atu0849 at 850.336 kb on - strand, within Atu0849 at 850.423 kb on + strand, within Atu0849 at 850.468 kb on - strand at 850.556 kb on + strand at 850.564 kb on - strand at 850.585 kb on + strand at 850.772 kb on + strand, within Atu0850 at 850.915 kb on + strand, within Atu0850 at 850.953 kb on + strand, within Atu0850 at 850.991 kb on + strand, within Atu0850 at 851.137 kb on + strand, within Atu0850 at 851.137 kb on + strand, within Atu0850 at 851.145 kb on + strand, within Atu0850 at 851.197 kb on + strand, within Atu0850 at 851.237 kb on + strand, within Atu0850 at 851.263 kb on + strand, within Atu0850 at 851.405 kb on + strand, within Atu0850 at 851.414 kb on + strand, within Atu0850 at 851.485 kb on + strand, within Atu0850
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 848,842 - -1.9 848,863 - -1.0 848,869 + -0.6 848,870 - +0.7 848,912 + Atu0847 0.14 -1.3 848,937 + Atu0847 0.20 -3.1 849,016 - Atu0847 0.39 +4.8 849,035 + Atu0847 0.43 -0.1 849,051 + Atu0847 0.47 +2.5 849,062 + Atu0847 0.49 +1.8 849,077 + Atu0847 0.53 -0.1 849,077 + Atu0847 0.53 +1.2 849,111 - Atu0847 0.61 -0.9 849,111 - Atu0847 0.61 -3.2 849,148 + Atu0847 0.70 -0.8 849,237 - -1.6 849,247 + -0.4 849,247 - -0.2 849,298 + -0.6 849,415 - +0.9 849,475 - Atu0848 0.23 +1.9 849,846 - -0.9 850,134 + Atu0849 0.46 +1.0 850,175 + Atu0849 0.52 -0.1 850,183 - Atu0849 0.53 +1.1 850,239 - Atu0849 0.62 +2.0 850,255 + Atu0849 0.64 +0.3 850,273 + Atu0849 0.67 +0.1 850,328 + Atu0849 0.75 +0.8 850,328 + Atu0849 0.75 -0.7 850,336 - Atu0849 0.77 +0.5 850,336 - Atu0849 0.77 +2.1 850,423 + Atu0849 0.90 +1.7 850,468 - -2.2 850,556 + +0.7 850,564 - +0.0 850,585 + -0.8 850,772 + Atu0850 0.19 +2.5 850,915 + Atu0850 0.30 -1.5 850,953 + Atu0850 0.32 -1.5 850,991 + Atu0850 0.35 +1.3 851,137 + Atu0850 0.46 +1.4 851,137 + Atu0850 0.46 +0.5 851,145 + Atu0850 0.46 +0.4 851,197 + Atu0850 0.50 -0.2 851,237 + Atu0850 0.53 +1.1 851,263 + Atu0850 0.55 -0.2 851,405 + Atu0850 0.65 -0.7 851,414 + Atu0850 0.66 -0.3 851,485 + Atu0850 0.71 +0.7
Or see this region's nucleotide sequence