Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0806 and Atu0807 are separated by 178 nucleotides Atu0807 and Atu0808 are separated by 203 nucleotides Atu0808 and Atu0809 are separated by 12 nucleotides Atu0809 and Atu0810 overlap by 11 nucleotides
Atu0806: Atu0806 - hypothetical protein, at 807,277 to 808,197
Atu0806
Atu0807: Atu0807 - metallo-beta-lactamase superfamily protein, at 808,376 to 809,284
Atu0807
Atu0808: Atu0808 - tRNA-Gln, at 809,488 to 809,562
Atu0808
Atu0809: Atu0809 - hypothetical protein, at 809,575 to 809,886
Atu0809
Atu0810: Atu0810 - hypothetical protein, at 809,876 to 810,157
Atu0810
Position (kb) 808
809
810 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 807.379 kb on - strand, within Atu0806 at 807.406 kb on - strand, within Atu0806 at 807.425 kb on - strand, within Atu0806 at 807.442 kb on - strand, within Atu0806 at 807.442 kb on - strand, within Atu0806 at 807.447 kb on - strand, within Atu0806 at 807.480 kb on + strand, within Atu0806 at 807.480 kb on + strand, within Atu0806 at 807.480 kb on + strand, within Atu0806 at 807.480 kb on + strand, within Atu0806 at 807.480 kb on + strand, within Atu0806 at 807.528 kb on + strand, within Atu0806 at 807.541 kb on - strand, within Atu0806 at 807.541 kb on - strand, within Atu0806 at 807.571 kb on + strand, within Atu0806 at 807.639 kb on + strand, within Atu0806 at 807.639 kb on + strand, within Atu0806 at 807.724 kb on - strand, within Atu0806 at 807.760 kb on - strand, within Atu0806 at 807.856 kb on - strand, within Atu0806 at 807.873 kb on + strand, within Atu0806 at 807.875 kb on + strand, within Atu0806 at 807.881 kb on - strand, within Atu0806 at 807.881 kb on - strand, within Atu0806 at 807.915 kb on + strand, within Atu0806 at 807.918 kb on - strand, within Atu0806 at 807.985 kb on + strand, within Atu0806 at 808.020 kb on + strand, within Atu0806 at 808.061 kb on - strand, within Atu0806 at 808.146 kb on + strand at 808.180 kb on + strand at 808.231 kb on - strand at 808.240 kb on + strand at 808.324 kb on + strand at 808.329 kb on + strand at 808.332 kb on - strand at 808.354 kb on - strand at 808.462 kb on + strand at 808.495 kb on + strand, within Atu0807 at 808.559 kb on + strand, within Atu0807 at 808.630 kb on - strand, within Atu0807 at 808.680 kb on + strand, within Atu0807 at 808.740 kb on + strand, within Atu0807 at 808.747 kb on - strand, within Atu0807 at 808.829 kb on - strand, within Atu0807 at 808.879 kb on + strand, within Atu0807 at 808.930 kb on - strand, within Atu0807 at 809.035 kb on + strand, within Atu0807 at 809.051 kb on + strand, within Atu0807 at 809.053 kb on - strand, within Atu0807 at 809.059 kb on - strand, within Atu0807 at 809.069 kb on + strand, within Atu0807 at 809.070 kb on - strand, within Atu0807 at 809.556 kb on + strand at 809.574 kb on - strand at 809.663 kb on + strand, within Atu0809 at 809.801 kb on + strand, within Atu0809 at 810.058 kb on + strand, within Atu0810
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 807,379 - Atu0806 0.11 -0.7 807,406 - Atu0806 0.14 +1.6 807,425 - Atu0806 0.16 -0.5 807,442 - Atu0806 0.18 +1.0 807,442 - Atu0806 0.18 +0.1 807,447 - Atu0806 0.18 -0.0 807,480 + Atu0806 0.22 -0.2 807,480 + Atu0806 0.22 +0.2 807,480 + Atu0806 0.22 -1.7 807,480 + Atu0806 0.22 -2.0 807,480 + Atu0806 0.22 -2.5 807,528 + Atu0806 0.27 +0.9 807,541 - Atu0806 0.29 -0.0 807,541 - Atu0806 0.29 +2.1 807,571 + Atu0806 0.32 -0.1 807,639 + Atu0806 0.39 -1.5 807,639 + Atu0806 0.39 +0.1 807,724 - Atu0806 0.49 -1.5 807,760 - Atu0806 0.52 +0.6 807,856 - Atu0806 0.63 +1.2 807,873 + Atu0806 0.65 -3.7 807,875 + Atu0806 0.65 -0.6 807,881 - Atu0806 0.66 +0.9 807,881 - Atu0806 0.66 -0.2 807,915 + Atu0806 0.69 -0.4 807,918 - Atu0806 0.70 -1.2 807,985 + Atu0806 0.77 +2.7 808,020 + Atu0806 0.81 +1.3 808,061 - Atu0806 0.85 -1.7 808,146 + +1.0 808,180 + +0.2 808,231 - +0.3 808,240 + +0.4 808,324 + +0.0 808,329 + +0.1 808,332 - +0.0 808,354 - -0.5 808,462 + -0.1 808,495 + Atu0807 0.13 -0.3 808,559 + Atu0807 0.20 -0.4 808,630 - Atu0807 0.28 +2.9 808,680 + Atu0807 0.33 -0.6 808,740 + Atu0807 0.40 +0.2 808,747 - Atu0807 0.41 -0.7 808,829 - Atu0807 0.50 -1.9 808,879 + Atu0807 0.55 +0.3 808,930 - Atu0807 0.61 -0.6 809,035 + Atu0807 0.72 +0.2 809,051 + Atu0807 0.74 -1.1 809,053 - Atu0807 0.74 -0.6 809,059 - Atu0807 0.75 +0.4 809,069 + Atu0807 0.76 -1.5 809,070 - Atu0807 0.76 -1.6 809,556 + +0.0 809,574 - +0.3 809,663 + Atu0809 0.28 +1.7 809,801 + Atu0809 0.72 +1.4 810,058 + Atu0810 0.65 -2.3
Or see this region's nucleotide sequence