Strain Fitness in Agrobacterium fabrum C58 around Atu0805

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0804 and Atu0805 are separated by 32 nucleotidesAtu0805 and Atu0806 are separated by 254 nucleotides Atu0804: Atu0804 - proton/glutamate transport protein, at 805,152 to 806,516 Atu0804 Atu0805: Atu0805 - hypothetical protein, at 806,549 to 807,022 Atu0805 Atu0806: Atu0806 - hypothetical protein, at 807,277 to 808,197 Atu0806 Position (kb) 806 807 808Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 805.699 kb on - strand, within Atu0804at 805.846 kb on + strand, within Atu0804at 806.047 kb on - strand, within Atu0804at 806.047 kb on - strand, within Atu0804at 806.047 kb on - strand, within Atu0804at 806.047 kb on - strand, within Atu0804at 806.047 kb on - strand, within Atu0804at 806.147 kb on - strand, within Atu0804at 806.190 kb on + strand, within Atu0804at 806.211 kb on + strand, within Atu0804at 806.211 kb on + strand, within Atu0804at 806.219 kb on - strand, within Atu0804at 806.292 kb on + strand, within Atu0804at 806.433 kb on - strandat 806.702 kb on + strand, within Atu0805at 806.702 kb on + strand, within Atu0805at 806.766 kb on + strand, within Atu0805at 806.774 kb on - strand, within Atu0805at 806.819 kb on + strand, within Atu0805at 806.827 kb on - strand, within Atu0805at 806.995 kb on + strandat 807.052 kb on + strandat 807.108 kb on + strandat 807.139 kb on + strandat 807.373 kb on + strand, within Atu0806at 807.379 kb on - strand, within Atu0806at 807.406 kb on - strand, within Atu0806at 807.425 kb on - strand, within Atu0806at 807.442 kb on - strand, within Atu0806at 807.442 kb on - strand, within Atu0806at 807.447 kb on - strand, within Atu0806at 807.480 kb on + strand, within Atu0806at 807.480 kb on + strand, within Atu0806at 807.480 kb on + strand, within Atu0806at 807.480 kb on + strand, within Atu0806at 807.480 kb on + strand, within Atu0806at 807.528 kb on + strand, within Atu0806at 807.541 kb on - strand, within Atu0806at 807.541 kb on - strand, within Atu0806at 807.571 kb on + strand, within Atu0806at 807.639 kb on + strand, within Atu0806at 807.639 kb on + strand, within Atu0806at 807.724 kb on - strand, within Atu0806at 807.760 kb on - strand, within Atu0806at 807.856 kb on - strand, within Atu0806at 807.873 kb on + strand, within Atu0806at 807.875 kb on + strand, within Atu0806at 807.881 kb on - strand, within Atu0806at 807.881 kb on - strand, within Atu0806at 807.915 kb on + strand, within Atu0806at 807.918 kb on - strand, within Atu0806at 807.985 kb on + strand, within Atu0806at 808.020 kb on + strand, within Atu0806

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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805,699 - Atu0804 0.40 -1.1
805,846 + Atu0804 0.51 -0.0
806,047 - Atu0804 0.66 -0.0
806,047 - Atu0804 0.66 +1.0
806,047 - Atu0804 0.66 -0.2
806,047 - Atu0804 0.66 -2.0
806,047 - Atu0804 0.66 -2.2
806,147 - Atu0804 0.73 +0.8
806,190 + Atu0804 0.76 -2.6
806,211 + Atu0804 0.78 +0.1
806,211 + Atu0804 0.78 -1.4
806,219 - Atu0804 0.78 +0.2
806,292 + Atu0804 0.84 -1.9
806,433 - -0.8
806,702 + Atu0805 0.32 -2.6
806,702 + Atu0805 0.32 +0.2
806,766 + Atu0805 0.46 +1.8
806,774 - Atu0805 0.47 -0.1
806,819 + Atu0805 0.57 +0.4
806,827 - Atu0805 0.59 -2.6
806,995 + +0.2
807,052 + +2.9
807,108 + +0.2
807,139 + +0.1
807,373 + Atu0806 0.10 -1.9
807,379 - Atu0806 0.11 -0.7
807,406 - Atu0806 0.14 +1.6
807,425 - Atu0806 0.16 -0.5
807,442 - Atu0806 0.18 +1.0
807,442 - Atu0806 0.18 +0.1
807,447 - Atu0806 0.18 -0.0
807,480 + Atu0806 0.22 -0.2
807,480 + Atu0806 0.22 +0.2
807,480 + Atu0806 0.22 -1.7
807,480 + Atu0806 0.22 -2.0
807,480 + Atu0806 0.22 -2.5
807,528 + Atu0806 0.27 +0.9
807,541 - Atu0806 0.29 -0.0
807,541 - Atu0806 0.29 +2.1
807,571 + Atu0806 0.32 -0.1
807,639 + Atu0806 0.39 -1.5
807,639 + Atu0806 0.39 +0.1
807,724 - Atu0806 0.49 -1.5
807,760 - Atu0806 0.52 +0.6
807,856 - Atu0806 0.63 +1.2
807,873 + Atu0806 0.65 -3.7
807,875 + Atu0806 0.65 -0.6
807,881 - Atu0806 0.66 +0.9
807,881 - Atu0806 0.66 -0.2
807,915 + Atu0806 0.69 -0.4
807,918 - Atu0806 0.70 -1.2
807,985 + Atu0806 0.77 +2.7
808,020 + Atu0806 0.81 +1.3

Or see this region's nucleotide sequence