Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0709 and Atu0710 are separated by 287 nucleotides Atu0710 and Atu0711 are separated by 15 nucleotides
Atu0709: Atu0709 - mrp protein, at 709,245 to 710,411
Atu0709
Atu0710: Atu0710 - magnesium/cobalt transport protein, at 710,699 to 711,727
Atu0710
Atu0711: Atu0711 - potassium uptake protein, at 711,743 to 713,662
Atu0711
Position (kb) 710
711
712 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 710.368 kb on + strand at 710.451 kb on + strand at 710.589 kb on + strand at 710.624 kb on + strand at 710.624 kb on + strand at 710.636 kb on + strand at 710.639 kb on - strand at 710.639 kb on - strand at 710.639 kb on - strand at 710.664 kb on - strand at 710.677 kb on - strand at 710.684 kb on - strand at 710.707 kb on - strand at 710.717 kb on + strand at 710.800 kb on - strand at 710.848 kb on - strand, within Atu0710 at 710.917 kb on + strand, within Atu0710 at 710.917 kb on + strand, within Atu0710 at 710.949 kb on + strand, within Atu0710 at 711.017 kb on - strand, within Atu0710 at 711.064 kb on + strand, within Atu0710 at 711.163 kb on - strand, within Atu0710 at 711.262 kb on + strand, within Atu0710 at 711.332 kb on - strand, within Atu0710 at 711.350 kb on - strand, within Atu0710 at 711.403 kb on + strand, within Atu0710 at 711.403 kb on - strand, within Atu0710 at 711.421 kb on + strand, within Atu0710 at 711.421 kb on + strand, within Atu0710 at 711.429 kb on - strand, within Atu0710 at 711.429 kb on - strand, within Atu0710 at 711.654 kb on + strand at 711.721 kb on + strand at 711.721 kb on + strand at 711.729 kb on - strand at 711.879 kb on - strand at 711.880 kb on - strand at 711.909 kb on + strand at 712.120 kb on + strand, within Atu0711 at 712.120 kb on + strand, within Atu0711 at 712.128 kb on - strand, within Atu0711 at 712.295 kb on - strand, within Atu0711 at 712.375 kb on + strand, within Atu0711 at 712.453 kb on - strand, within Atu0711 at 712.479 kb on + strand, within Atu0711 at 712.487 kb on - strand, within Atu0711 at 712.528 kb on - strand, within Atu0711 at 712.606 kb on - strand, within Atu0711 at 712.610 kb on - strand, within Atu0711 at 712.616 kb on + strand, within Atu0711
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 710,368 + +0.4 710,451 + -1.9 710,589 + -0.5 710,624 + -0.5 710,624 + -0.1 710,636 + +0.7 710,639 - -2.3 710,639 - -1.1 710,639 - -1.0 710,664 - -2.2 710,677 - +2.8 710,684 - +0.2 710,707 - +0.8 710,717 + +0.7 710,800 - -0.6 710,848 - Atu0710 0.14 +0.3 710,917 + Atu0710 0.21 -1.9 710,917 + Atu0710 0.21 -0.6 710,949 + Atu0710 0.24 -2.7 711,017 - Atu0710 0.31 -0.4 711,064 + Atu0710 0.35 -0.6 711,163 - Atu0710 0.45 -1.2 711,262 + Atu0710 0.55 +0.5 711,332 - Atu0710 0.62 -1.4 711,350 - Atu0710 0.63 -0.2 711,403 + Atu0710 0.68 -0.0 711,403 - Atu0710 0.68 -1.0 711,421 + Atu0710 0.70 +1.7 711,421 + Atu0710 0.70 -0.1 711,429 - Atu0710 0.71 -1.4 711,429 - Atu0710 0.71 -0.5 711,654 + +0.4 711,721 + -1.7 711,721 + +0.0 711,729 - -2.1 711,879 - -1.2 711,880 - -0.7 711,909 + -0.3 712,120 + Atu0711 0.20 -1.3 712,120 + Atu0711 0.20 +0.5 712,128 - Atu0711 0.20 -0.9 712,295 - Atu0711 0.29 -1.1 712,375 + Atu0711 0.33 -3.1 712,453 - Atu0711 0.37 -3.2 712,479 + Atu0711 0.38 -0.6 712,487 - Atu0711 0.39 -0.3 712,528 - Atu0711 0.41 -2.4 712,606 - Atu0711 0.45 +0.6 712,610 - Atu0711 0.45 +2.3 712,616 + Atu0711 0.45 -0.3
Or see this region's nucleotide sequence