Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0706 and Atu0707 are separated by 345 nucleotides Atu0707 and Atu0708 are separated by 78 nucleotides
Atu0706: Atu0706 - transcriptional regulator, IclR family, at 706,036 to 706,875
Atu0706
Atu0707: Atu0707 - transcriptional regulator, LuxR family, at 707,221 to 707,826
Atu0707
Atu0708: Atu0708 - ABC transporter, nucleotide binding/ATPase protein, at 707,905 to 709,128
Atu0708
Position (kb) 707
708 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 706.292 kb on + strand, within Atu0706 at 706.310 kb on - strand, within Atu0706 at 706.328 kb on - strand, within Atu0706 at 706.331 kb on + strand, within Atu0706 at 706.331 kb on + strand, within Atu0706 at 706.331 kb on + strand, within Atu0706 at 706.339 kb on - strand, within Atu0706 at 706.339 kb on - strand, within Atu0706 at 706.414 kb on - strand, within Atu0706 at 706.443 kb on + strand, within Atu0706 at 706.443 kb on + strand, within Atu0706 at 706.462 kb on - strand, within Atu0706 at 706.520 kb on + strand, within Atu0706 at 706.662 kb on - strand, within Atu0706 at 706.799 kb on - strand at 706.983 kb on - strand at 707.116 kb on - strand at 707.116 kb on - strand at 707.189 kb on + strand at 707.224 kb on - strand at 707.245 kb on - strand at 707.326 kb on + strand, within Atu0707 at 707.407 kb on + strand, within Atu0707 at 707.509 kb on + strand, within Atu0707 at 707.517 kb on - strand, within Atu0707 at 707.592 kb on - strand, within Atu0707 at 707.618 kb on + strand, within Atu0707 at 707.659 kb on + strand, within Atu0707 at 707.660 kb on + strand, within Atu0707 at 707.680 kb on + strand, within Atu0707 at 707.772 kb on + strand at 707.785 kb on - strand at 707.916 kb on + strand at 707.923 kb on - strand at 708.002 kb on + strand at 708.081 kb on + strand, within Atu0708 at 708.097 kb on + strand, within Atu0708 at 708.110 kb on - strand, within Atu0708 at 708.224 kb on + strand, within Atu0708 at 708.247 kb on + strand, within Atu0708 at 708.267 kb on - strand, within Atu0708 at 708.342 kb on + strand, within Atu0708 at 708.342 kb on + strand, within Atu0708 at 708.342 kb on + strand, within Atu0708 at 708.342 kb on + strand, within Atu0708 at 708.342 kb on + strand, within Atu0708 at 708.342 kb on + strand, within Atu0708 at 708.342 kb on + strand, within Atu0708 at 708.342 kb on + strand, within Atu0708 at 708.350 kb on - strand, within Atu0708 at 708.350 kb on - strand, within Atu0708 at 708.350 kb on - strand, within Atu0708 at 708.350 kb on - strand, within Atu0708 at 708.350 kb on - strand, within Atu0708 at 708.350 kb on - strand, within Atu0708 at 708.371 kb on - strand, within Atu0708 at 708.437 kb on - strand, within Atu0708 at 708.465 kb on + strand, within Atu0708 at 708.488 kb on + strand, within Atu0708 at 708.498 kb on + strand, within Atu0708 at 708.569 kb on - strand, within Atu0708 at 708.569 kb on - strand, within Atu0708 at 708.640 kb on + strand, within Atu0708 at 708.648 kb on - strand, within Atu0708 at 708.648 kb on - strand, within Atu0708 at 708.697 kb on + strand, within Atu0708 at 708.705 kb on - strand, within Atu0708 at 708.705 kb on - strand, within Atu0708 at 708.729 kb on - strand, within Atu0708 at 708.803 kb on + strand, within Atu0708 at 708.811 kb on - strand, within Atu0708
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 706,292 + Atu0706 0.30 -0.6 706,310 - Atu0706 0.33 +0.2 706,328 - Atu0706 0.35 +0.5 706,331 + Atu0706 0.35 +0.7 706,331 + Atu0706 0.35 -1.8 706,331 + Atu0706 0.35 -0.1 706,339 - Atu0706 0.36 +0.1 706,339 - Atu0706 0.36 -1.5 706,414 - Atu0706 0.45 +0.1 706,443 + Atu0706 0.48 -0.9 706,443 + Atu0706 0.48 -3.2 706,462 - Atu0706 0.51 -0.1 706,520 + Atu0706 0.58 -0.1 706,662 - Atu0706 0.75 -2.9 706,799 - +0.0 706,983 - +1.6 707,116 - -0.5 707,116 - +1.8 707,189 + +0.1 707,224 - -1.6 707,245 - +0.2 707,326 + Atu0707 0.17 +1.6 707,407 + Atu0707 0.31 +0.7 707,509 + Atu0707 0.48 -0.5 707,517 - Atu0707 0.49 -0.3 707,592 - Atu0707 0.61 -2.4 707,618 + Atu0707 0.66 -0.4 707,659 + Atu0707 0.72 -0.2 707,660 + Atu0707 0.72 -0.1 707,680 + Atu0707 0.76 -2.0 707,772 + +0.7 707,785 - -2.3 707,916 + +1.7 707,923 - +1.3 708,002 + -1.9 708,081 + Atu0708 0.14 -1.1 708,097 + Atu0708 0.16 +2.8 708,110 - Atu0708 0.17 -1.2 708,224 + Atu0708 0.26 +1.5 708,247 + Atu0708 0.28 -1.1 708,267 - Atu0708 0.30 +0.0 708,342 + Atu0708 0.36 +1.1 708,342 + Atu0708 0.36 -1.1 708,342 + Atu0708 0.36 -0.8 708,342 + Atu0708 0.36 +0.3 708,342 + Atu0708 0.36 -1.3 708,342 + Atu0708 0.36 -0.1 708,342 + Atu0708 0.36 -0.6 708,342 + Atu0708 0.36 -2.7 708,350 - Atu0708 0.36 -3.1 708,350 - Atu0708 0.36 -0.4 708,350 - Atu0708 0.36 +0.2 708,350 - Atu0708 0.36 +0.7 708,350 - Atu0708 0.36 -0.9 708,350 - Atu0708 0.36 +0.5 708,371 - Atu0708 0.38 +0.9 708,437 - Atu0708 0.43 -0.1 708,465 + Atu0708 0.46 -1.8 708,488 + Atu0708 0.48 +0.6 708,498 + Atu0708 0.48 -0.1 708,569 - Atu0708 0.54 -1.1 708,569 - Atu0708 0.54 -0.2 708,640 + Atu0708 0.60 +1.0 708,648 - Atu0708 0.61 -1.0 708,648 - Atu0708 0.61 -2.8 708,697 + Atu0708 0.65 -0.3 708,705 - Atu0708 0.65 -0.2 708,705 - Atu0708 0.65 +0.9 708,729 - Atu0708 0.67 -0.2 708,803 + Atu0708 0.73 +2.5 708,811 - Atu0708 0.74 +0.6
Or see this region's nucleotide sequence