Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0702 and Atu0703 are separated by 4 nucleotides Atu0703 and Atu0704 are separated by 15 nucleotides Atu0704 and Atu0705 overlap by 1 nucleotides Atu0705 and Atu0706 are separated by 109 nucleotides
Atu0702: Atu0702 - calcium-binding protein, regucalcin, at 702,702 to 703,589
Atu0702
Atu0703: Atu0703 - keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase, at 703,594 to 704,223
Atu0703
Atu0704: Atu0704 - 2-dehydro-3-deoxygalactonate kinase, at 704,239 to 705,153
Atu0704
Atu0705: Atu0705 - 3-oxoacyl-(acyl carrier protein) reductase, at 705,153 to 705,926
Atu0705
Atu0706: Atu0706 - transcriptional regulator, IclR family, at 706,036 to 706,875
Atu0706
Position (kb) 704
705
706 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 703.376 kb on + strand, within Atu0702 at 703.483 kb on - strand, within Atu0702 at 703.590 kb on + strand at 703.658 kb on - strand, within Atu0703 at 703.678 kb on - strand, within Atu0703 at 703.858 kb on - strand, within Atu0703 at 704.131 kb on - strand, within Atu0703 at 704.336 kb on + strand, within Atu0704 at 704.336 kb on + strand, within Atu0704 at 704.358 kb on + strand, within Atu0704 at 704.474 kb on - strand, within Atu0704 at 704.484 kb on - strand, within Atu0704 at 704.541 kb on - strand, within Atu0704 at 704.541 kb on - strand, within Atu0704 at 704.571 kb on - strand, within Atu0704 at 704.603 kb on - strand, within Atu0704 at 704.622 kb on + strand, within Atu0704 at 704.651 kb on + strand, within Atu0704 at 704.693 kb on - strand, within Atu0704 at 704.747 kb on + strand, within Atu0704 at 704.755 kb on - strand, within Atu0704 at 704.755 kb on - strand, within Atu0704 at 704.804 kb on + strand, within Atu0704 at 704.812 kb on - strand, within Atu0704 at 704.812 kb on - strand, within Atu0704 at 704.812 kb on - strand, within Atu0704 at 704.812 kb on - strand, within Atu0704 at 704.916 kb on - strand, within Atu0704 at 704.917 kb on - strand, within Atu0704 at 704.951 kb on + strand, within Atu0704 at 704.998 kb on - strand, within Atu0704 at 705.125 kb on - strand at 705.131 kb on - strand at 705.151 kb on + strand at 705.294 kb on + strand, within Atu0705 at 705.441 kb on - strand, within Atu0705 at 705.499 kb on + strand, within Atu0705 at 705.507 kb on - strand, within Atu0705 at 705.527 kb on - strand, within Atu0705 at 705.529 kb on + strand, within Atu0705 at 705.569 kb on + strand, within Atu0705 at 705.598 kb on - strand, within Atu0705 at 705.670 kb on + strand, within Atu0705 at 705.678 kb on - strand, within Atu0705 at 705.772 kb on + strand, within Atu0705 at 705.775 kb on - strand, within Atu0705 at 705.828 kb on + strand, within Atu0705 at 705.886 kb on + strand at 705.886 kb on + strand at 705.888 kb on - strand at 705.894 kb on - strand at 705.894 kb on - strand at 705.894 kb on - strand at 706.008 kb on + strand at 706.016 kb on - strand at 706.086 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 703,376 + Atu0702 0.76 +0.8 703,483 - Atu0702 0.88 +0.4 703,590 + -2.2 703,658 - Atu0703 0.10 +0.3 703,678 - Atu0703 0.13 -2.6 703,858 - Atu0703 0.42 +0.3 704,131 - Atu0703 0.85 -0.4 704,336 + Atu0704 0.11 -0.2 704,336 + Atu0704 0.11 +1.2 704,358 + Atu0704 0.13 -0.0 704,474 - Atu0704 0.26 +0.1 704,484 - Atu0704 0.27 -1.5 704,541 - Atu0704 0.33 +1.1 704,541 - Atu0704 0.33 -0.5 704,571 - Atu0704 0.36 -0.5 704,603 - Atu0704 0.40 -1.3 704,622 + Atu0704 0.42 -2.3 704,651 + Atu0704 0.45 +0.3 704,693 - Atu0704 0.50 +0.8 704,747 + Atu0704 0.56 +0.2 704,755 - Atu0704 0.56 -0.0 704,755 - Atu0704 0.56 -1.7 704,804 + Atu0704 0.62 +1.1 704,812 - Atu0704 0.63 +0.8 704,812 - Atu0704 0.63 -0.9 704,812 - Atu0704 0.63 +0.0 704,812 - Atu0704 0.63 +0.4 704,916 - Atu0704 0.74 +1.0 704,917 - Atu0704 0.74 -0.3 704,951 + Atu0704 0.78 -1.0 704,998 - Atu0704 0.83 +0.7 705,125 - -0.3 705,131 - +2.9 705,151 + +2.3 705,294 + Atu0705 0.18 -0.1 705,441 - Atu0705 0.37 +2.2 705,499 + Atu0705 0.45 +1.3 705,507 - Atu0705 0.46 +0.4 705,527 - Atu0705 0.48 -0.8 705,529 + Atu0705 0.49 +1.9 705,569 + Atu0705 0.54 -0.1 705,598 - Atu0705 0.57 +0.2 705,670 + Atu0705 0.67 -0.2 705,678 - Atu0705 0.68 +0.3 705,772 + Atu0705 0.80 +0.7 705,775 - Atu0705 0.80 -0.1 705,828 + Atu0705 0.87 +0.0 705,886 + +0.2 705,886 + -0.7 705,888 - -0.5 705,894 - +1.3 705,894 - -2.7 705,894 - +0.9 706,008 + -0.6 706,016 - -0.6 706,086 - -0.3
Or see this region's nucleotide sequence