Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0564 and Atu0565 are separated by 5 nucleotides Atu0565 and Atu0566 are separated by 80 nucleotides Atu0566 and Atu0567 are separated by 14 nucleotides Atu0567 and Atu0568 are separated by 279 nucleotides Atu0568 and Atu0569 overlap by 4 nucleotides
Atu0564: Atu0564 - flagellar biosynthetic protein, at 549,382 to 550,464
Atu0564
Atu0565: Atu0565 - hypothetical protein, at 550,470 to 550,907
Atu0565
Atu0566: Atu0566 - hypothetical protein, at 550,988 to 551,200
Atu0566
Atu0567: Atu0567 - flagellin protein FlaD, at 551,215 to 552,507
Atu0567
Atu0568: Atu0568 - hypothetical protein, at 552,787 to 553,443
Atu0568
Atu0569: Atu0569 - flagellar motor protein, PAL/OmpA family, at 553,440 to 554,741
Atu0569
Position (kb) 551
552
553 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 550.221 kb on - strand, within Atu0564 at 550.221 kb on - strand, within Atu0564 at 550.272 kb on - strand, within Atu0564 at 550.347 kb on + strand, within Atu0564 at 550.347 kb on + strand, within Atu0564 at 550.400 kb on + strand at 550.402 kb on + strand at 550.468 kb on - strand at 550.486 kb on + strand at 550.486 kb on + strand at 550.486 kb on + strand at 550.505 kb on + strand at 550.585 kb on - strand, within Atu0565 at 550.639 kb on - strand, within Atu0565 at 550.782 kb on - strand, within Atu0565 at 550.848 kb on + strand, within Atu0565 at 550.867 kb on - strand at 550.890 kb on - strand at 550.895 kb on - strand at 550.985 kb on + strand at 551.002 kb on + strand at 551.004 kb on - strand at 551.075 kb on - strand, within Atu0566 at 551.133 kb on - strand, within Atu0566 at 551.232 kb on - strand at 551.241 kb on + strand at 551.283 kb on - strand at 551.293 kb on + strand at 551.368 kb on + strand, within Atu0567 at 551.406 kb on - strand, within Atu0567 at 551.411 kb on + strand, within Atu0567 at 551.441 kb on - strand, within Atu0567 at 551.463 kb on - strand, within Atu0567 at 551.484 kb on + strand, within Atu0567 at 551.484 kb on + strand, within Atu0567 at 551.492 kb on - strand, within Atu0567 at 551.497 kb on - strand, within Atu0567 at 551.515 kb on - strand, within Atu0567 at 551.564 kb on - strand, within Atu0567 at 551.568 kb on + strand, within Atu0567 at 551.622 kb on - strand, within Atu0567 at 551.632 kb on - strand, within Atu0567 at 551.642 kb on - strand, within Atu0567 at 551.739 kb on + strand, within Atu0567 at 551.764 kb on - strand, within Atu0567 at 551.764 kb on - strand, within Atu0567 at 551.764 kb on - strand, within Atu0567 at 551.840 kb on + strand, within Atu0567 at 551.872 kb on + strand, within Atu0567 at 551.889 kb on + strand, within Atu0567 at 551.889 kb on + strand, within Atu0567 at 551.890 kb on - strand, within Atu0567 at 551.955 kb on + strand, within Atu0567 at 552.060 kb on - strand, within Atu0567 at 552.093 kb on + strand, within Atu0567 at 552.093 kb on + strand, within Atu0567 at 552.189 kb on - strand, within Atu0567 at 552.189 kb on - strand, within Atu0567 at 552.211 kb on + strand, within Atu0567 at 552.211 kb on + strand, within Atu0567 at 552.219 kb on - strand, within Atu0567 at 552.223 kb on - strand, within Atu0567 at 552.294 kb on - strand, within Atu0567 at 552.307 kb on - strand, within Atu0567 at 552.323 kb on - strand, within Atu0567 at 552.367 kb on + strand, within Atu0567 at 552.399 kb on - strand at 552.414 kb on + strand at 552.422 kb on - strand at 552.574 kb on - strand at 552.583 kb on + strand at 552.671 kb on - strand at 552.671 kb on - strand at 552.696 kb on + strand at 552.777 kb on - strand at 552.784 kb on + strand at 552.792 kb on - strand at 552.828 kb on + strand at 552.828 kb on + strand at 552.955 kb on - strand, within Atu0568 at 553.035 kb on - strand, within Atu0568 at 553.103 kb on + strand, within Atu0568 at 553.218 kb on + strand, within Atu0568 at 553.226 kb on - strand, within Atu0568 at 553.243 kb on - strand, within Atu0568 at 553.307 kb on - strand, within Atu0568 at 553.307 kb on - strand, within Atu0568 at 553.307 kb on - strand, within Atu0568 at 553.307 kb on - strand, within Atu0568 at 553.377 kb on + strand, within Atu0568 at 553.377 kb on + strand, within Atu0568 at 553.496 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 550,221 - Atu0564 0.77 -0.9 550,221 - Atu0564 0.77 +0.7 550,272 - Atu0564 0.82 -0.2 550,347 + Atu0564 0.89 -0.6 550,347 + Atu0564 0.89 -0.2 550,400 + -2.1 550,402 + -0.5 550,468 - -0.0 550,486 + -0.2 550,486 + +0.1 550,486 + -1.2 550,505 + +2.9 550,585 - Atu0565 0.26 +0.2 550,639 - Atu0565 0.39 +1.5 550,782 - Atu0565 0.71 -1.4 550,848 + Atu0565 0.86 -0.5 550,867 - -0.8 550,890 - -0.2 550,895 - -1.3 550,985 + -0.5 551,002 + -0.0 551,004 - +0.4 551,075 - Atu0566 0.41 -0.5 551,133 - Atu0566 0.68 +0.8 551,232 - +1.4 551,241 + -0.0 551,283 - +0.3 551,293 + -1.2 551,368 + Atu0567 0.12 +0.5 551,406 - Atu0567 0.15 -1.5 551,411 + Atu0567 0.15 -0.3 551,441 - Atu0567 0.17 -0.8 551,463 - Atu0567 0.19 -0.9 551,484 + Atu0567 0.21 +2.2 551,484 + Atu0567 0.21 +0.3 551,492 - Atu0567 0.21 -0.8 551,497 - Atu0567 0.22 +0.9 551,515 - Atu0567 0.23 -0.3 551,564 - Atu0567 0.27 -0.2 551,568 + Atu0567 0.27 +0.6 551,622 - Atu0567 0.31 +0.3 551,632 - Atu0567 0.32 +0.2 551,642 - Atu0567 0.33 +0.5 551,739 + Atu0567 0.41 -1.2 551,764 - Atu0567 0.42 -1.0 551,764 - Atu0567 0.42 +0.8 551,764 - Atu0567 0.42 -0.4 551,840 + Atu0567 0.48 -0.1 551,872 + Atu0567 0.51 +0.4 551,889 + Atu0567 0.52 -0.7 551,889 + Atu0567 0.52 -1.4 551,890 - Atu0567 0.52 -0.1 551,955 + Atu0567 0.57 +0.1 552,060 - Atu0567 0.65 -1.8 552,093 + Atu0567 0.68 +0.7 552,093 + Atu0567 0.68 +0.3 552,189 - Atu0567 0.75 -1.7 552,189 - Atu0567 0.75 -0.6 552,211 + Atu0567 0.77 -1.1 552,211 + Atu0567 0.77 -0.5 552,219 - Atu0567 0.78 -0.8 552,223 - Atu0567 0.78 -1.8 552,294 - Atu0567 0.83 -0.9 552,307 - Atu0567 0.84 +0.9 552,323 - Atu0567 0.86 +0.7 552,367 + Atu0567 0.89 -1.3 552,399 - -0.7 552,414 + +0.0 552,422 - -1.2 552,574 - -0.5 552,583 + +1.0 552,671 - +0.0 552,671 - +0.7 552,696 + -1.9 552,777 - -0.9 552,784 + -0.6 552,792 - -0.6 552,828 + +0.1 552,828 + -1.7 552,955 - Atu0568 0.26 +1.9 553,035 - Atu0568 0.38 -0.4 553,103 + Atu0568 0.48 +1.7 553,218 + Atu0568 0.66 -3.2 553,226 - Atu0568 0.67 -0.5 553,243 - Atu0568 0.69 -1.0 553,307 - Atu0568 0.79 -0.4 553,307 - Atu0568 0.79 -0.1 553,307 - Atu0568 0.79 -1.1 553,307 - Atu0568 0.79 +0.0 553,377 + Atu0568 0.90 +0.2 553,377 + Atu0568 0.90 +1.4 553,496 + -0.9
Or see this region's nucleotide sequence