Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0296 and Atu0297 are separated by 121 nucleotides Atu0297 and Atu0298 are separated by 20 nucleotides Atu0298 and Atu0299 are separated by 4 nucleotides
Atu0296: Atu0296 - NADH-ubiquinone oxidoreductase, at 290,155 to 291,135
Atu0296
Atu0297: Atu0297 - hypothetical protein, at 291,257 to 291,544
Atu0297
Atu0298: Atu0298 - orotidine 5, at 291,565 to 292,272
Atu0298
Atu0299: Atu0299 - hypothetical protein, at 292,277 to 292,873
Atu0299
Position (kb) 291
292 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 290.371 kb on - strand, within Atu0296 at 290.473 kb on - strand, within Atu0296 at 290.485 kb on - strand, within Atu0296 at 290.688 kb on - strand, within Atu0296 at 290.692 kb on + strand, within Atu0296 at 290.737 kb on + strand, within Atu0296 at 290.948 kb on + strand, within Atu0296 at 290.949 kb on + strand, within Atu0296 at 291.009 kb on + strand, within Atu0296 at 291.017 kb on - strand, within Atu0296 at 291.019 kb on + strand, within Atu0296 at 291.027 kb on - strand, within Atu0296 at 291.046 kb on - strand at 291.130 kb on + strand at 291.138 kb on - strand at 291.144 kb on + strand at 291.144 kb on + strand at 291.144 kb on + strand at 291.152 kb on - strand at 291.182 kb on + strand at 291.182 kb on + strand at 291.182 kb on + strand at 291.229 kb on - strand at 291.231 kb on + strand at 291.323 kb on + strand, within Atu0297 at 291.333 kb on - strand, within Atu0297 at 291.348 kb on + strand, within Atu0297 at 291.363 kb on + strand, within Atu0297 at 291.454 kb on + strand, within Atu0297 at 291.471 kb on + strand, within Atu0297 at 291.859 kb on + strand, within Atu0298 at 291.862 kb on - strand, within Atu0298 at 291.904 kb on - strand, within Atu0298 at 291.925 kb on + strand, within Atu0298 at 291.933 kb on - strand, within Atu0298 at 291.933 kb on - strand, within Atu0298 at 291.993 kb on - strand, within Atu0298 at 292.000 kb on - strand, within Atu0298 at 292.022 kb on + strand, within Atu0298 at 292.064 kb on + strand, within Atu0298 at 292.072 kb on - strand, within Atu0298 at 292.072 kb on - strand, within Atu0298 at 292.074 kb on - strand, within Atu0298 at 292.083 kb on + strand, within Atu0298 at 292.182 kb on + strand, within Atu0298 at 292.210 kb on + strand at 292.227 kb on - strand at 292.268 kb on + strand at 292.274 kb on + strand at 292.275 kb on - strand at 292.409 kb on + strand, within Atu0299 at 292.421 kb on + strand, within Atu0299 at 292.422 kb on + strand, within Atu0299 at 292.461 kb on - strand, within Atu0299 at 292.471 kb on + strand, within Atu0299 at 292.479 kb on - strand, within Atu0299 at 292.489 kb on - strand, within Atu0299
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 290,371 - Atu0296 0.22 +4.6 290,473 - Atu0296 0.32 +0.3 290,485 - Atu0296 0.34 +0.4 290,688 - Atu0296 0.54 -2.3 290,692 + Atu0296 0.55 +1.7 290,737 + Atu0296 0.59 +0.8 290,948 + Atu0296 0.81 -0.3 290,949 + Atu0296 0.81 +1.2 291,009 + Atu0296 0.87 +0.2 291,017 - Atu0296 0.88 -0.0 291,019 + Atu0296 0.88 -0.2 291,027 - Atu0296 0.89 -2.4 291,046 - -0.3 291,130 + +1.3 291,138 - +1.5 291,144 + -0.3 291,144 + +0.4 291,144 + -0.4 291,152 - -1.0 291,182 + -1.2 291,182 + -1.4 291,182 + +0.3 291,229 - -0.1 291,231 + -0.7 291,323 + Atu0297 0.23 +4.8 291,333 - Atu0297 0.26 -0.7 291,348 + Atu0297 0.32 -2.9 291,363 + Atu0297 0.37 +1.7 291,454 + Atu0297 0.68 -0.8 291,471 + Atu0297 0.74 -3.4 291,859 + Atu0298 0.42 +0.5 291,862 - Atu0298 0.42 -0.4 291,904 - Atu0298 0.48 -3.5 291,925 + Atu0298 0.51 -2.6 291,933 - Atu0298 0.52 -0.6 291,933 - Atu0298 0.52 +2.1 291,993 - Atu0298 0.60 -1.3 292,000 - Atu0298 0.61 +0.5 292,022 + Atu0298 0.65 -0.1 292,064 + Atu0298 0.70 -0.5 292,072 - Atu0298 0.72 +1.0 292,072 - Atu0298 0.72 -0.7 292,074 - Atu0298 0.72 +0.2 292,083 + Atu0298 0.73 -2.4 292,182 + Atu0298 0.87 -0.1 292,210 + -3.3 292,227 - -0.7 292,268 + -0.8 292,274 + +2.0 292,275 - -0.1 292,409 + Atu0299 0.22 +1.3 292,421 + Atu0299 0.24 -0.2 292,422 + Atu0299 0.24 +0.3 292,461 - Atu0299 0.31 -1.0 292,471 + Atu0299 0.32 -0.3 292,479 - Atu0299 0.34 -1.6 292,489 - Atu0299 0.36 +0.7
Or see this region's nucleotide sequence