Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0202 and Atu0203 are separated by 24 nucleotides Atu0203 and Atu0204 are separated by 142 nucleotides
Atu0202: Atu0202 - ABC transporter, substrate binding protein (iron), at 206,109 to 207,173
Atu0202
Atu0203: Atu0203 - hypothetical protein, at 207,198 to 208,115
Atu0203
Atu0204: Atu0204 - hypothetical protein, at 208,258 to 209,361
Atu0204
Position (kb) 207
208
209 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 206.227 kb on - strand, within Atu0202 at 206.236 kb on + strand, within Atu0202 at 206.241 kb on + strand, within Atu0202 at 206.246 kb on + strand, within Atu0202 at 206.317 kb on - strand, within Atu0202 at 206.338 kb on - strand, within Atu0202 at 206.338 kb on - strand, within Atu0202 at 206.340 kb on - strand, within Atu0202 at 206.401 kb on - strand, within Atu0202 at 206.408 kb on + strand, within Atu0202 at 206.408 kb on + strand, within Atu0202 at 206.408 kb on + strand, within Atu0202 at 206.432 kb on + strand, within Atu0202 at 206.561 kb on - strand, within Atu0202 at 206.600 kb on - strand, within Atu0202 at 206.600 kb on - strand, within Atu0202 at 206.670 kb on + strand, within Atu0202 at 206.702 kb on + strand, within Atu0202 at 206.813 kb on + strand, within Atu0202 at 206.813 kb on + strand, within Atu0202 at 206.878 kb on - strand, within Atu0202 at 207.027 kb on - strand, within Atu0202 at 207.034 kb on + strand, within Atu0202 at 207.132 kb on - strand at 207.265 kb on + strand at 207.273 kb on - strand at 207.275 kb on + strand at 207.380 kb on + strand, within Atu0203 at 207.387 kb on + strand, within Atu0203 at 207.395 kb on - strand, within Atu0203 at 207.497 kb on + strand, within Atu0203 at 207.503 kb on + strand, within Atu0203 at 207.710 kb on + strand, within Atu0203 at 207.834 kb on - strand, within Atu0203 at 207.834 kb on - strand, within Atu0203 at 207.910 kb on - strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.122 kb on + strand at 208.194 kb on - strand at 208.210 kb on + strand at 208.211 kb on + strand at 208.220 kb on - strand at 208.220 kb on - strand at 208.339 kb on - strand at 208.343 kb on - strand at 208.354 kb on - strand at 208.411 kb on + strand, within Atu0204 at 208.414 kb on - strand, within Atu0204 at 208.553 kb on + strand, within Atu0204 at 208.553 kb on + strand, within Atu0204 at 208.565 kb on + strand, within Atu0204 at 208.623 kb on + strand, within Atu0204 at 208.660 kb on + strand, within Atu0204 at 208.691 kb on + strand, within Atu0204 at 208.742 kb on + strand, within Atu0204 at 208.750 kb on - strand, within Atu0204 at 208.766 kb on + strand, within Atu0204 at 208.771 kb on + strand, within Atu0204 at 208.779 kb on - strand, within Atu0204 at 208.806 kb on - strand, within Atu0204 at 208.834 kb on - strand, within Atu0204 at 208.834 kb on - strand, within Atu0204 at 208.834 kb on - strand, within Atu0204 at 208.847 kb on + strand, within Atu0204 at 208.855 kb on - strand, within Atu0204 at 208.855 kb on - strand, within Atu0204 at 208.892 kb on + strand, within Atu0204 at 208.905 kb on + strand, within Atu0204 at 208.984 kb on + strand, within Atu0204 at 209.029 kb on - strand, within Atu0204 at 209.062 kb on + strand, within Atu0204
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 206,227 - Atu0202 0.11 -0.9 206,236 + Atu0202 0.12 -0.3 206,241 + Atu0202 0.12 +0.6 206,246 + Atu0202 0.13 +0.2 206,317 - Atu0202 0.20 -1.1 206,338 - Atu0202 0.22 -0.9 206,338 - Atu0202 0.22 +0.2 206,340 - Atu0202 0.22 +0.5 206,401 - Atu0202 0.27 +0.6 206,408 + Atu0202 0.28 -1.2 206,408 + Atu0202 0.28 +0.9 206,408 + Atu0202 0.28 -0.3 206,432 + Atu0202 0.30 +0.3 206,561 - Atu0202 0.42 -0.5 206,600 - Atu0202 0.46 -0.2 206,600 - Atu0202 0.46 +0.9 206,670 + Atu0202 0.53 -1.0 206,702 + Atu0202 0.56 -2.2 206,813 + Atu0202 0.66 +0.8 206,813 + Atu0202 0.66 -2.1 206,878 - Atu0202 0.72 -2.1 207,027 - Atu0202 0.86 +0.9 207,034 + Atu0202 0.87 +0.3 207,132 - -1.0 207,265 + -1.7 207,273 - +1.1 207,275 + +1.1 207,380 + Atu0203 0.20 +0.7 207,387 + Atu0203 0.21 +1.0 207,395 - Atu0203 0.21 +0.4 207,497 + Atu0203 0.33 -1.2 207,503 + Atu0203 0.33 -1.2 207,710 + Atu0203 0.56 -1.6 207,834 - Atu0203 0.69 -1.0 207,834 - Atu0203 0.69 +0.0 207,910 - Atu0203 0.78 -1.4 208,004 + Atu0203 0.88 -0.4 208,004 + Atu0203 0.88 +1.5 208,004 + Atu0203 0.88 -0.3 208,004 + Atu0203 0.88 -1.2 208,004 + Atu0203 0.88 -1.4 208,004 + Atu0203 0.88 -2.5 208,004 + Atu0203 0.88 +0.2 208,004 + Atu0203 0.88 -0.4 208,004 + Atu0203 0.88 +2.1 208,004 + Atu0203 0.88 +2.0 208,004 + Atu0203 0.88 -1.2 208,012 - Atu0203 0.89 +0.4 208,012 - Atu0203 0.89 -1.0 208,012 - Atu0203 0.89 +1.5 208,012 - Atu0203 0.89 +0.8 208,012 - Atu0203 0.89 +1.4 208,012 - Atu0203 0.89 -0.1 208,012 - Atu0203 0.89 -1.2 208,012 - Atu0203 0.89 -0.3 208,012 - Atu0203 0.89 -1.0 208,012 - Atu0203 0.89 +1.2 208,012 - Atu0203 0.89 +1.2 208,012 - Atu0203 0.89 +0.3 208,012 - Atu0203 0.89 +0.1 208,012 - Atu0203 0.89 -0.6 208,012 - Atu0203 0.89 +1.0 208,012 - Atu0203 0.89 +1.0 208,012 - Atu0203 0.89 -0.8 208,012 - Atu0203 0.89 +1.6 208,122 + -1.6 208,194 - -0.5 208,210 + +1.9 208,211 + +0.8 208,220 - -0.7 208,220 - +0.9 208,339 - +2.9 208,343 - +0.3 208,354 - -0.9 208,411 + Atu0204 0.14 -0.6 208,414 - Atu0204 0.14 +0.3 208,553 + Atu0204 0.27 -0.7 208,553 + Atu0204 0.27 +0.5 208,565 + Atu0204 0.28 -1.2 208,623 + Atu0204 0.33 +2.2 208,660 + Atu0204 0.36 -0.9 208,691 + Atu0204 0.39 -0.7 208,742 + Atu0204 0.44 +0.6 208,750 - Atu0204 0.45 -0.8 208,766 + Atu0204 0.46 -2.5 208,771 + Atu0204 0.46 +0.1 208,779 - Atu0204 0.47 -0.4 208,806 - Atu0204 0.50 -1.5 208,834 - Atu0204 0.52 +0.4 208,834 - Atu0204 0.52 -3.3 208,834 - Atu0204 0.52 +2.5 208,847 + Atu0204 0.53 -2.5 208,855 - Atu0204 0.54 -0.8 208,855 - Atu0204 0.54 -0.4 208,892 + Atu0204 0.57 +1.6 208,905 + Atu0204 0.59 -0.8 208,984 + Atu0204 0.66 +0.7 209,029 - Atu0204 0.70 -0.1 209,062 + Atu0204 0.73 +0.3
Or see this region's nucleotide sequence