Strain Fitness in Agrobacterium fabrum C58 around Atu0193

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0193 and Atu0194 overlap by 26 nucleotides Atu0193: Atu0193 - glutamine synthetase, at 196,923 to 198,281 Atu0193 Atu0194: Atu0194 - oxidoreductase, at 198,256 to 199,584 Atu0194 Position (kb) 196 197 198 199Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 196.015 kb on + strandat 196.020 kb on + strandat 196.083 kb on - strandat 196.085 kb on - strandat 196.126 kb on + strandat 196.128 kb on + strandat 196.142 kb on + strandat 196.167 kb on + strandat 196.194 kb on + strandat 196.200 kb on - strandat 196.200 kb on - strandat 196.200 kb on - strandat 196.274 kb on + strandat 196.275 kb on + strandat 196.285 kb on + strandat 196.345 kb on - strandat 196.347 kb on + strandat 196.355 kb on - strandat 196.362 kb on - strandat 196.405 kb on + strandat 196.469 kb on + strandat 196.505 kb on + strandat 196.505 kb on + strandat 196.505 kb on + strandat 196.505 kb on + strandat 196.513 kb on - strandat 196.538 kb on - strandat 196.556 kb on - strandat 196.610 kb on - strandat 196.647 kb on + strandat 196.812 kb on + strandat 196.853 kb on - strandat 196.986 kb on + strandat 197.446 kb on - strand, within Atu0193at 197.510 kb on + strand, within Atu0193at 197.518 kb on - strand, within Atu0193at 197.678 kb on + strand, within Atu0193at 197.883 kb on + strand, within Atu0193at 197.888 kb on + strand, within Atu0193at 197.888 kb on + strand, within Atu0193at 198.194 kb on + strandat 198.261 kb on + strandat 198.275 kb on + strandat 198.322 kb on + strandat 198.368 kb on + strandat 198.434 kb on + strand, within Atu0194at 198.455 kb on + strand, within Atu0194at 198.463 kb on - strand, within Atu0194at 198.487 kb on - strand, within Atu0194at 198.499 kb on - strand, within Atu0194at 198.648 kb on - strand, within Atu0194at 198.868 kb on - strand, within Atu0194at 198.868 kb on - strand, within Atu0194at 198.868 kb on - strand, within Atu0194at 198.878 kb on - strand, within Atu0194at 198.967 kb on + strand, within Atu0194at 198.975 kb on - strand, within Atu0194at 198.975 kb on - strand, within Atu0194at 198.985 kb on - strand, within Atu0194at 199.094 kb on + strand, within Atu0194at 199.108 kb on - strand, within Atu0194at 199.204 kb on + strand, within Atu0194at 199.204 kb on + strand, within Atu0194at 199.212 kb on - strand, within Atu0194at 199.213 kb on - strand, within Atu0194at 199.213 kb on - strand, within Atu0194

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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196,015 + +1.8
196,020 + +0.4
196,083 - -1.1
196,085 - +0.3
196,126 + +0.3
196,128 + +1.1
196,142 + +1.4
196,167 + +0.8
196,194 + -0.2
196,200 - -0.4
196,200 - -0.9
196,200 - -0.6
196,274 + +2.2
196,275 + +0.4
196,285 + -0.3
196,345 - -0.9
196,347 + -1.5
196,355 - +1.7
196,362 - -1.1
196,405 + -2.7
196,469 + +0.4
196,505 + -0.6
196,505 + +2.7
196,505 + -2.0
196,505 + +1.4
196,513 - +0.5
196,538 - +0.4
196,556 - +0.1
196,610 - -0.9
196,647 + -2.6
196,812 + -0.2
196,853 - -3.2
196,986 + +0.8
197,446 - Atu0193 0.38 +1.0
197,510 + Atu0193 0.43 +1.9
197,518 - Atu0193 0.44 -2.1
197,678 + Atu0193 0.56 +1.5
197,883 + Atu0193 0.71 +1.3
197,888 + Atu0193 0.71 -0.7
197,888 + Atu0193 0.71 +0.8
198,194 + +0.5
198,261 + -0.2
198,275 + +0.2
198,322 + +1.6
198,368 + -0.4
198,434 + Atu0194 0.13 +1.8
198,455 + Atu0194 0.15 +0.7
198,463 - Atu0194 0.16 -1.2
198,487 - Atu0194 0.17 -0.2
198,499 - Atu0194 0.18 -0.3
198,648 - Atu0194 0.29 +0.4
198,868 - Atu0194 0.46 +3.2
198,868 - Atu0194 0.46 -0.3
198,868 - Atu0194 0.46 -0.6
198,878 - Atu0194 0.47 -0.4
198,967 + Atu0194 0.53 -0.6
198,975 - Atu0194 0.54 -3.3
198,975 - Atu0194 0.54 -1.9
198,985 - Atu0194 0.55 +1.0
199,094 + Atu0194 0.63 -1.6
199,108 - Atu0194 0.64 +1.4
199,204 + Atu0194 0.71 -1.8
199,204 + Atu0194 0.71 +0.8
199,212 - Atu0194 0.72 +2.9
199,213 - Atu0194 0.72 +1.0
199,213 - Atu0194 0.72 -1.1

Or see this region's nucleotide sequence