Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0438 and Atu8122 are separated by 282 nucleotides
Atu0438: Atu0438 - phage-related integrase, at 433,831 to 434,859
Atu0438
Atu8122: Atu8122 - hypothetical protein, at 435,142 to 436,047
Atu8122
Position (kb) 435
436
437 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 434.166 kb on + strand, within Atu0438 at 434.336 kb on + strand, within Atu0438 at 434.336 kb on + strand, within Atu0438 at 434.336 kb on + strand, within Atu0438 at 434.344 kb on - strand, within Atu0438 at 434.344 kb on - strand, within Atu0438 at 434.354 kb on - strand, within Atu0438 at 434.382 kb on + strand, within Atu0438 at 434.389 kb on + strand, within Atu0438 at 434.392 kb on + strand, within Atu0438 at 434.395 kb on - strand, within Atu0438 at 434.400 kb on - strand, within Atu0438 at 434.400 kb on - strand, within Atu0438 at 434.400 kb on - strand, within Atu0438 at 434.418 kb on + strand, within Atu0438 at 434.450 kb on - strand, within Atu0438 at 434.507 kb on + strand, within Atu0438 at 434.573 kb on + strand, within Atu0438 at 434.575 kb on + strand, within Atu0438 at 434.583 kb on - strand, within Atu0438 at 434.600 kb on - strand, within Atu0438 at 434.612 kb on - strand, within Atu0438 at 434.663 kb on + strand, within Atu0438 at 434.671 kb on - strand, within Atu0438 at 434.671 kb on - strand, within Atu0438 at 434.676 kb on - strand, within Atu0438 at 434.708 kb on + strand, within Atu0438 at 434.731 kb on + strand, within Atu0438 at 434.784 kb on - strand at 434.820 kb on + strand at 434.820 kb on + strand at 434.821 kb on - strand at 434.821 kb on - strand at 434.821 kb on - strand at 434.994 kb on + strand at 434.996 kb on + strand at 435.028 kb on + strand at 435.083 kb on - strand at 435.207 kb on + strand at 435.207 kb on + strand at 435.207 kb on + strand at 435.207 kb on + strand at 435.207 kb on + strand at 435.229 kb on - strand at 435.260 kb on - strand, within Atu8122 at 435.446 kb on + strand, within Atu8122 at 435.488 kb on + strand, within Atu8122 at 435.489 kb on + strand, within Atu8122 at 435.688 kb on - strand, within Atu8122 at 435.744 kb on - strand, within Atu8122 at 435.836 kb on + strand, within Atu8122 at 435.857 kb on + strand, within Atu8122 at 435.949 kb on - strand, within Atu8122 at 435.949 kb on - strand, within Atu8122 at 435.973 kb on - strand at 435.991 kb on + strand at 436.050 kb on - strand at 436.137 kb on - strand at 436.176 kb on + strand at 436.222 kb on + strand at 436.222 kb on - strand at 436.258 kb on - strand at 436.280 kb on + strand at 436.280 kb on + strand at 436.280 kb on + strand at 436.306 kb on - strand at 436.323 kb on - strand at 436.332 kb on + strand at 436.364 kb on + strand at 436.380 kb on + strand at 436.386 kb on - strand at 436.413 kb on + strand at 436.421 kb on - strand at 436.447 kb on + strand at 436.489 kb on - strand at 436.522 kb on + strand at 436.530 kb on - strand at 436.604 kb on - strand at 436.764 kb on - strand at 436.799 kb on + strand at 436.814 kb on + strand at 436.898 kb on - strand at 436.981 kb on + strand at 436.986 kb on + strand at 436.989 kb on - strand at 436.997 kb on - strand at 436.999 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 434,166 + Atu0438 0.33 +0.9 434,336 + Atu0438 0.49 -0.8 434,336 + Atu0438 0.49 -0.3 434,336 + Atu0438 0.49 +2.1 434,344 - Atu0438 0.50 +0.8 434,344 - Atu0438 0.50 +0.8 434,354 - Atu0438 0.51 +1.7 434,382 + Atu0438 0.54 +0.6 434,389 + Atu0438 0.54 -0.7 434,392 + Atu0438 0.55 +1.5 434,395 - Atu0438 0.55 +2.7 434,400 - Atu0438 0.55 -0.2 434,400 - Atu0438 0.55 -2.1 434,400 - Atu0438 0.55 +0.4 434,418 + Atu0438 0.57 -0.3 434,450 - Atu0438 0.60 -0.7 434,507 + Atu0438 0.66 -0.9 434,573 + Atu0438 0.72 +1.0 434,575 + Atu0438 0.72 +1.4 434,583 - Atu0438 0.73 -0.1 434,600 - Atu0438 0.75 -0.2 434,612 - Atu0438 0.76 -1.8 434,663 + Atu0438 0.81 -0.5 434,671 - Atu0438 0.82 +0.3 434,671 - Atu0438 0.82 +0.2 434,676 - Atu0438 0.82 -0.0 434,708 + Atu0438 0.85 +0.9 434,731 + Atu0438 0.87 +0.3 434,784 - -0.8 434,820 + +1.2 434,820 + +0.6 434,821 - -1.0 434,821 - +0.6 434,821 - -0.1 434,994 + -2.0 434,996 + +0.4 435,028 + +1.0 435,083 - +0.8 435,207 + -0.5 435,207 + -0.2 435,207 + -0.9 435,207 + +0.5 435,207 + +3.2 435,229 - -0.3 435,260 - Atu8122 0.13 -0.9 435,446 + Atu8122 0.34 -2.0 435,488 + Atu8122 0.38 -0.5 435,489 + Atu8122 0.38 -0.9 435,688 - Atu8122 0.60 +0.2 435,744 - Atu8122 0.66 +0.3 435,836 + Atu8122 0.77 +0.6 435,857 + Atu8122 0.79 -0.6 435,949 - Atu8122 0.89 -2.1 435,949 - Atu8122 0.89 -1.1 435,973 - +0.2 435,991 + +0.4 436,050 - +0.5 436,137 - +1.2 436,176 + +0.8 436,222 + +0.5 436,222 - -0.7 436,258 - +0.5 436,280 + +0.1 436,280 + +0.7 436,280 + -0.0 436,306 - -0.5 436,323 - +0.6 436,332 + +0.3 436,364 + -0.0 436,380 + -0.7 436,386 - +0.9 436,413 + -2.1 436,421 - +1.1 436,447 + +1.1 436,489 - +0.6 436,522 + -1.6 436,530 - +0.3 436,604 - -1.2 436,764 - +2.1 436,799 + +0.4 436,814 + +0.6 436,898 - +0.6 436,981 + -0.9 436,986 + -1.6 436,989 - +1.3 436,997 - +0.4 436,999 + +0.1
Or see this region's nucleotide sequence