Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5179 and Atu5181 are separated by 637 nucleotides Atu5181 and Atu5182 are separated by 95 nucleotides
Atu5179: Atu5179 - hypothetical protein, at 177,272 to 177,562
Atu5179
Atu5181: Atu5181 - short chain dehydrogenase, at 178,200 to 178,937
Atu5181
Atu5182: Atu5182 - quinone oxidoreductase, at 179,033 to 179,968
Atu5182
Position (kb) 178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 177.245 kb on - strand at 177.249 kb on + strand at 177.274 kb on + strand at 177.314 kb on + strand, within Atu5179 at 177.317 kb on - strand, within Atu5179 at 177.332 kb on - strand, within Atu5179 at 177.383 kb on + strand, within Atu5179 at 177.391 kb on - strand, within Atu5179 at 177.402 kb on - strand, within Atu5179 at 177.445 kb on + strand, within Atu5179 at 177.445 kb on + strand, within Atu5179 at 177.453 kb on - strand, within Atu5179 at 177.549 kb on - strand at 177.584 kb on - strand at 177.670 kb on + strand at 177.673 kb on - strand at 177.793 kb on + strand at 177.798 kb on + strand at 177.806 kb on - strand at 177.857 kb on - strand at 177.904 kb on - strand at 177.932 kb on + strand at 177.948 kb on + strand at 177.956 kb on - strand at 177.956 kb on - strand at 178.060 kb on + strand at 178.075 kb on + strand at 178.196 kb on + strand at 178.198 kb on + strand at 178.204 kb on - strand at 178.204 kb on - strand at 178.204 kb on - strand at 178.204 kb on - strand at 178.204 kb on - strand at 178.206 kb on - strand at 178.229 kb on + strand at 178.319 kb on + strand, within Atu5181 at 178.319 kb on + strand, within Atu5181 at 178.319 kb on + strand, within Atu5181 at 178.319 kb on + strand, within Atu5181 at 178.319 kb on + strand, within Atu5181 at 178.319 kb on + strand, within Atu5181 at 178.319 kb on + strand, within Atu5181 at 178.319 kb on + strand, within Atu5181 at 178.327 kb on - strand, within Atu5181 at 178.327 kb on - strand, within Atu5181 at 178.327 kb on - strand, within Atu5181 at 178.327 kb on - strand, within Atu5181 at 178.327 kb on - strand, within Atu5181 at 178.327 kb on - strand, within Atu5181 at 178.405 kb on + strand, within Atu5181 at 178.418 kb on + strand, within Atu5181 at 178.550 kb on + strand, within Atu5181 at 178.642 kb on + strand, within Atu5181 at 178.737 kb on - strand, within Atu5181 at 178.738 kb on - strand, within Atu5181 at 178.738 kb on - strand, within Atu5181 at 179.006 kb on + strand at 179.021 kb on + strand at 179.139 kb on - strand, within Atu5182 at 179.142 kb on + strand, within Atu5182 at 179.142 kb on + strand, within Atu5182 at 179.150 kb on - strand, within Atu5182 at 179.150 kb on - strand, within Atu5182 at 179.165 kb on - strand, within Atu5182 at 179.165 kb on - strand, within Atu5182 at 179.227 kb on + strand, within Atu5182 at 179.235 kb on - strand, within Atu5182 at 179.235 kb on - strand, within Atu5182 at 179.263 kb on - strand, within Atu5182 at 179.265 kb on + strand, within Atu5182 at 179.267 kb on - strand, within Atu5182 at 179.314 kb on + strand, within Atu5182 at 179.373 kb on - strand, within Atu5182 at 179.494 kb on - strand, within Atu5182 at 179.506 kb on + strand, within Atu5182 at 179.506 kb on + strand, within Atu5182 at 179.506 kb on + strand, within Atu5182 at 179.514 kb on - strand, within Atu5182 at 179.547 kb on + strand, within Atu5182 at 179.557 kb on - strand, within Atu5182 at 179.585 kb on + strand, within Atu5182 at 179.604 kb on + strand, within Atu5182 at 179.619 kb on + strand, within Atu5182 at 179.693 kb on - strand, within Atu5182 at 179.715 kb on - strand, within Atu5182 at 179.734 kb on - strand, within Atu5182 at 179.768 kb on + strand, within Atu5182 at 179.769 kb on + strand, within Atu5182 at 179.794 kb on - strand, within Atu5182 at 179.817 kb on + strand, within Atu5182 at 179.889 kb on + strand at 179.897 kb on - strand at 179.921 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 177,245 - -1.5 177,249 + +1.4 177,274 + -0.2 177,314 + Atu5179 0.14 -0.3 177,317 - Atu5179 0.15 +0.2 177,332 - Atu5179 0.21 +0.6 177,383 + Atu5179 0.38 +0.4 177,391 - Atu5179 0.41 +0.6 177,402 - Atu5179 0.45 -0.1 177,445 + Atu5179 0.59 -0.2 177,445 + Atu5179 0.59 +0.5 177,453 - Atu5179 0.62 +3.5 177,549 - +0.0 177,584 - -1.0 177,670 + -3.0 177,673 - +1.7 177,793 + -0.3 177,798 + +0.2 177,806 - -3.5 177,857 - +1.6 177,904 - +1.7 177,932 + -0.4 177,948 + +0.5 177,956 - -1.3 177,956 - +0.4 178,060 + -0.3 178,075 + +1.0 178,196 + -1.0 178,198 + -0.4 178,204 - +0.7 178,204 - +1.5 178,204 - +0.8 178,204 - +0.0 178,204 - +0.2 178,206 - +2.2 178,229 + +0.5 178,319 + Atu5181 0.16 +0.3 178,319 + Atu5181 0.16 -2.1 178,319 + Atu5181 0.16 -2.0 178,319 + Atu5181 0.16 -0.1 178,319 + Atu5181 0.16 -1.9 178,319 + Atu5181 0.16 +2.3 178,319 + Atu5181 0.16 +0.5 178,319 + Atu5181 0.16 -1.3 178,327 - Atu5181 0.17 +0.7 178,327 - Atu5181 0.17 +0.3 178,327 - Atu5181 0.17 +0.6 178,327 - Atu5181 0.17 -0.2 178,327 - Atu5181 0.17 +0.6 178,327 - Atu5181 0.17 -2.0 178,405 + Atu5181 0.28 -0.5 178,418 + Atu5181 0.30 +0.4 178,550 + Atu5181 0.47 +0.9 178,642 + Atu5181 0.60 -1.1 178,737 - Atu5181 0.73 +1.0 178,738 - Atu5181 0.73 -1.1 178,738 - Atu5181 0.73 +1.9 179,006 + -0.2 179,021 + -0.3 179,139 - Atu5182 0.11 +0.4 179,142 + Atu5182 0.12 +0.0 179,142 + Atu5182 0.12 +0.1 179,150 - Atu5182 0.12 +0.9 179,150 - Atu5182 0.12 -0.6 179,165 - Atu5182 0.14 -0.9 179,165 - Atu5182 0.14 +0.4 179,227 + Atu5182 0.21 +0.2 179,235 - Atu5182 0.22 +0.1 179,235 - Atu5182 0.22 -0.2 179,263 - Atu5182 0.25 +0.0 179,265 + Atu5182 0.25 +0.2 179,267 - Atu5182 0.25 +1.8 179,314 + Atu5182 0.30 +1.4 179,373 - Atu5182 0.36 +0.4 179,494 - Atu5182 0.49 +0.4 179,506 + Atu5182 0.51 -0.5 179,506 + Atu5182 0.51 +0.4 179,506 + Atu5182 0.51 -1.6 179,514 - Atu5182 0.51 -0.6 179,547 + Atu5182 0.55 -1.3 179,557 - Atu5182 0.56 +2.5 179,585 + Atu5182 0.59 +0.3 179,604 + Atu5182 0.61 +0.2 179,619 + Atu5182 0.63 -1.7 179,693 - Atu5182 0.71 -0.9 179,715 - Atu5182 0.73 +0.8 179,734 - Atu5182 0.75 +0.9 179,768 + Atu5182 0.79 -0.7 179,769 + Atu5182 0.79 -0.5 179,794 - Atu5182 0.81 +1.6 179,817 + Atu5182 0.84 -1.1 179,889 + -0.0 179,897 - +2.0 179,921 + +0.6
Or see this region's nucleotide sequence