Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5177 and Atu5178 are separated by 9 nucleotides Atu5178 and Atu5179 are separated by 297 nucleotides
Atu5177: Atu5177 - efflux protein, at 173,825 to 175,018
Atu5177
Atu5178: Atu5178 - ABC transporter nucleotide binding/ATPase, at 175,028 to 176,974
Atu5178
Atu5179: Atu5179 - hypothetical protein, at 177,272 to 177,562
Atu5179
Position (kb) 175
176
177 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 174.115 kb on + strand, within Atu5177 at 174.123 kb on - strand, within Atu5177 at 174.123 kb on - strand, within Atu5177 at 174.148 kb on + strand, within Atu5177 at 174.154 kb on + strand, within Atu5177 at 174.154 kb on + strand, within Atu5177 at 174.162 kb on - strand, within Atu5177 at 174.190 kb on + strand, within Atu5177 at 174.205 kb on - strand, within Atu5177 at 174.248 kb on - strand, within Atu5177 at 174.249 kb on + strand, within Atu5177 at 174.278 kb on + strand, within Atu5177 at 174.288 kb on - strand, within Atu5177 at 174.309 kb on - strand, within Atu5177 at 174.331 kb on + strand, within Atu5177 at 174.348 kb on + strand, within Atu5177 at 174.362 kb on + strand, within Atu5177 at 174.362 kb on + strand, within Atu5177 at 174.374 kb on + strand, within Atu5177 at 174.445 kb on + strand, within Atu5177 at 174.451 kb on - strand, within Atu5177 at 174.489 kb on + strand, within Atu5177 at 174.497 kb on - strand, within Atu5177 at 174.606 kb on + strand, within Atu5177 at 174.625 kb on - strand, within Atu5177 at 174.685 kb on + strand, within Atu5177 at 174.685 kb on + strand, within Atu5177 at 174.685 kb on + strand, within Atu5177 at 174.685 kb on + strand, within Atu5177 at 174.685 kb on + strand, within Atu5177 at 174.685 kb on + strand, within Atu5177 at 174.693 kb on - strand, within Atu5177 at 174.695 kb on + strand, within Atu5177 at 174.744 kb on - strand, within Atu5177 at 174.744 kb on - strand, within Atu5177 at 174.761 kb on + strand, within Atu5177 at 174.769 kb on - strand, within Atu5177 at 174.769 kb on - strand, within Atu5177 at 174.769 kb on - strand, within Atu5177 at 174.801 kb on + strand, within Atu5177 at 174.801 kb on + strand, within Atu5177 at 174.809 kb on - strand, within Atu5177 at 174.817 kb on + strand, within Atu5177 at 174.869 kb on + strand, within Atu5177 at 174.869 kb on + strand, within Atu5177 at 174.884 kb on + strand, within Atu5177 at 174.892 kb on - strand, within Atu5177 at 174.892 kb on - strand, within Atu5177 at 174.938 kb on - strand at 174.949 kb on - strand at 174.983 kb on - strand at 175.026 kb on - strand at 175.064 kb on - strand at 175.144 kb on - strand at 175.188 kb on + strand at 175.243 kb on - strand, within Atu5178 at 175.314 kb on + strand, within Atu5178 at 175.373 kb on + strand, within Atu5178 at 175.376 kb on - strand, within Atu5178 at 175.401 kb on - strand, within Atu5178 at 175.462 kb on + strand, within Atu5178 at 175.497 kb on + strand, within Atu5178 at 175.521 kb on + strand, within Atu5178 at 175.569 kb on - strand, within Atu5178 at 175.577 kb on + strand, within Atu5178 at 175.617 kb on + strand, within Atu5178 at 175.629 kb on - strand, within Atu5178 at 175.720 kb on + strand, within Atu5178 at 175.771 kb on - strand, within Atu5178 at 175.771 kb on - strand, within Atu5178 at 175.852 kb on - strand, within Atu5178 at 175.933 kb on - strand, within Atu5178 at 175.943 kb on - strand, within Atu5178 at 175.962 kb on - strand, within Atu5178 at 175.975 kb on - strand, within Atu5178 at 175.990 kb on - strand, within Atu5178 at 176.053 kb on + strand, within Atu5178 at 176.053 kb on + strand, within Atu5178 at 176.057 kb on + strand, within Atu5178 at 176.067 kb on + strand, within Atu5178 at 176.075 kb on - strand, within Atu5178 at 176.169 kb on + strand, within Atu5178 at 176.177 kb on - strand, within Atu5178 at 176.182 kb on - strand, within Atu5178 at 176.214 kb on - strand, within Atu5178 at 176.274 kb on + strand, within Atu5178 at 176.275 kb on + strand, within Atu5178 at 176.282 kb on - strand, within Atu5178 at 176.350 kb on - strand, within Atu5178 at 176.422 kb on - strand, within Atu5178 at 176.452 kb on + strand, within Atu5178 at 176.555 kb on + strand, within Atu5178 at 176.562 kb on + strand, within Atu5178 at 176.567 kb on + strand, within Atu5178 at 176.575 kb on - strand, within Atu5178 at 176.594 kb on - strand, within Atu5178 at 176.655 kb on - strand, within Atu5178 at 176.732 kb on - strand, within Atu5178 at 176.740 kb on + strand, within Atu5178 at 176.754 kb on + strand, within Atu5178 at 176.756 kb on + strand, within Atu5178 at 176.761 kb on + strand, within Atu5178 at 176.883 kb on - strand at 176.886 kb on + strand at 176.894 kb on - strand at 176.947 kb on + strand at 176.957 kb on + strand at 177.011 kb on + strand at 177.072 kb on - strand at 177.125 kb on - strand at 177.181 kb on + strand at 177.245 kb on - strand at 177.249 kb on + strand at 177.274 kb on + strand at 177.314 kb on + strand, within Atu5179 at 177.317 kb on - strand, within Atu5179 at 177.332 kb on - strand, within Atu5179 at 177.383 kb on + strand, within Atu5179 at 177.391 kb on - strand, within Atu5179 at 177.402 kb on - strand, within Atu5179 at 177.445 kb on + strand, within Atu5179 at 177.445 kb on + strand, within Atu5179 at 177.453 kb on - strand, within Atu5179 at 177.549 kb on - strand at 177.584 kb on - strand at 177.670 kb on + strand at 177.673 kb on - strand at 177.793 kb on + strand at 177.798 kb on + strand at 177.806 kb on - strand at 177.857 kb on - strand at 177.904 kb on - strand at 177.932 kb on + strand at 177.948 kb on + strand at 177.956 kb on - strand at 177.956 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 174,115 + Atu5177 0.24 -0.4 174,123 - Atu5177 0.25 -0.0 174,123 - Atu5177 0.25 +0.8 174,148 + Atu5177 0.27 -2.5 174,154 + Atu5177 0.28 -1.3 174,154 + Atu5177 0.28 -1.6 174,162 - Atu5177 0.28 -0.2 174,190 + Atu5177 0.31 -0.0 174,205 - Atu5177 0.32 -0.7 174,248 - Atu5177 0.35 -0.4 174,249 + Atu5177 0.36 -1.1 174,278 + Atu5177 0.38 +0.1 174,288 - Atu5177 0.39 +0.6 174,309 - Atu5177 0.41 +1.3 174,331 + Atu5177 0.42 -0.8 174,348 + Atu5177 0.44 -0.8 174,362 + Atu5177 0.45 +0.5 174,362 + Atu5177 0.45 -0.4 174,374 + Atu5177 0.46 +0.0 174,445 + Atu5177 0.52 +1.4 174,451 - Atu5177 0.52 -2.1 174,489 + Atu5177 0.56 +1.6 174,497 - Atu5177 0.56 +0.2 174,606 + Atu5177 0.65 -2.2 174,625 - Atu5177 0.67 +1.2 174,685 + Atu5177 0.72 +0.9 174,685 + Atu5177 0.72 +0.8 174,685 + Atu5177 0.72 +3.8 174,685 + Atu5177 0.72 -0.2 174,685 + Atu5177 0.72 -0.3 174,685 + Atu5177 0.72 +0.1 174,693 - Atu5177 0.73 -0.7 174,695 + Atu5177 0.73 -0.1 174,744 - Atu5177 0.77 -1.1 174,744 - Atu5177 0.77 -0.7 174,761 + Atu5177 0.78 +0.3 174,769 - Atu5177 0.79 +0.3 174,769 - Atu5177 0.79 -0.4 174,769 - Atu5177 0.79 -1.5 174,801 + Atu5177 0.82 +0.4 174,801 + Atu5177 0.82 -0.7 174,809 - Atu5177 0.82 -0.9 174,817 + Atu5177 0.83 -0.8 174,869 + Atu5177 0.87 +1.2 174,869 + Atu5177 0.87 +0.3 174,884 + Atu5177 0.89 -1.6 174,892 - Atu5177 0.89 +1.2 174,892 - Atu5177 0.89 +0.9 174,938 - +1.3 174,949 - +0.2 174,983 - +0.5 175,026 - +0.5 175,064 - +1.3 175,144 - -1.4 175,188 + +0.2 175,243 - Atu5178 0.11 +0.1 175,314 + Atu5178 0.15 -0.2 175,373 + Atu5178 0.18 -0.7 175,376 - Atu5178 0.18 -1.0 175,401 - Atu5178 0.19 -0.3 175,462 + Atu5178 0.22 +0.6 175,497 + Atu5178 0.24 -0.2 175,521 + Atu5178 0.25 -2.0 175,569 - Atu5178 0.28 -0.5 175,577 + Atu5178 0.28 +0.0 175,617 + Atu5178 0.30 +1.2 175,629 - Atu5178 0.31 +0.2 175,720 + Atu5178 0.36 -0.2 175,771 - Atu5178 0.38 -0.6 175,771 - Atu5178 0.38 -1.7 175,852 - Atu5178 0.42 -1.8 175,933 - Atu5178 0.46 +0.4 175,943 - Atu5178 0.47 +0.4 175,962 - Atu5178 0.48 +0.4 175,975 - Atu5178 0.49 -0.8 175,990 - Atu5178 0.49 +0.5 176,053 + Atu5178 0.53 +0.1 176,053 + Atu5178 0.53 -0.1 176,057 + Atu5178 0.53 +0.7 176,067 + Atu5178 0.53 +0.3 176,075 - Atu5178 0.54 +0.9 176,169 + Atu5178 0.59 +1.1 176,177 - Atu5178 0.59 +0.3 176,182 - Atu5178 0.59 +1.0 176,214 - Atu5178 0.61 -1.5 176,274 + Atu5178 0.64 +0.3 176,275 + Atu5178 0.64 +0.1 176,282 - Atu5178 0.64 +0.3 176,350 - Atu5178 0.68 -2.0 176,422 - Atu5178 0.72 +1.3 176,452 + Atu5178 0.73 -1.0 176,555 + Atu5178 0.78 +2.2 176,562 + Atu5178 0.79 +0.7 176,567 + Atu5178 0.79 -1.6 176,575 - Atu5178 0.79 -0.8 176,594 - Atu5178 0.80 +0.0 176,655 - Atu5178 0.84 -2.4 176,732 - Atu5178 0.88 -2.2 176,740 + Atu5178 0.88 -1.5 176,754 + Atu5178 0.89 +0.5 176,756 + Atu5178 0.89 +1.2 176,761 + Atu5178 0.89 -1.0 176,883 - +0.9 176,886 + -0.4 176,894 - +0.8 176,947 + +0.1 176,957 + +0.8 177,011 + +2.4 177,072 - -0.5 177,125 - -1.1 177,181 + -0.5 177,245 - -1.5 177,249 + +1.4 177,274 + -0.2 177,314 + Atu5179 0.14 -0.3 177,317 - Atu5179 0.15 +0.2 177,332 - Atu5179 0.21 +0.6 177,383 + Atu5179 0.38 +0.4 177,391 - Atu5179 0.41 +0.6 177,402 - Atu5179 0.45 -0.1 177,445 + Atu5179 0.59 -0.2 177,445 + Atu5179 0.59 +0.5 177,453 - Atu5179 0.62 +3.5 177,549 - +0.0 177,584 - -1.0 177,670 + -3.0 177,673 - +1.7 177,793 + -0.3 177,798 + +0.2 177,806 - -3.5 177,857 - +1.6 177,904 - +1.7 177,932 + -0.4 177,948 + +0.5 177,956 - -1.3 177,956 - +0.4
Or see this region's nucleotide sequence