Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3808 and Atu3809 are separated by 124 nucleotides Atu3809 and Atu3810 are separated by 109 nucleotides
Atu3808: Atu3808 - LysR family transcriptional regulator, at 904,721 to 905,626
Atu3808
Atu3809: Atu3809 - oxidoreductase, at 905,751 to 906,617
Atu3809
Atu3810: Atu3810 - LysR family transcriptional regulator, at 906,727 to 907,620
Atu3810
Position (kb) 905
906
907 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 904.794 kb on + strand at 904.905 kb on + strand, within Atu3808 at 904.931 kb on + strand, within Atu3808 at 905.023 kb on + strand, within Atu3808 at 905.069 kb on - strand, within Atu3808 at 905.101 kb on - strand, within Atu3808 at 905.124 kb on - strand, within Atu3808 at 905.171 kb on + strand, within Atu3808 at 905.303 kb on + strand, within Atu3808 at 905.311 kb on - strand, within Atu3808 at 905.373 kb on + strand, within Atu3808 at 905.373 kb on + strand, within Atu3808 at 905.381 kb on - strand, within Atu3808 at 905.551 kb on - strand at 905.560 kb on - strand at 905.591 kb on + strand at 905.617 kb on - strand at 905.629 kb on + strand at 905.644 kb on - strand at 905.676 kb on + strand at 905.684 kb on - strand at 905.701 kb on - strand at 905.713 kb on + strand at 905.713 kb on + strand at 905.721 kb on - strand at 905.721 kb on - strand at 905.721 kb on - strand at 905.734 kb on - strand at 905.734 kb on - strand at 905.746 kb on + strand at 905.766 kb on - strand at 905.768 kb on + strand at 905.776 kb on - strand at 905.981 kb on + strand, within Atu3809 at 906.007 kb on + strand, within Atu3809 at 906.019 kb on + strand, within Atu3809 at 906.069 kb on + strand, within Atu3809 at 906.082 kb on - strand, within Atu3809 at 906.115 kb on - strand, within Atu3809 at 906.360 kb on + strand, within Atu3809 at 906.425 kb on + strand, within Atu3809 at 906.425 kb on + strand, within Atu3809 at 906.471 kb on + strand, within Atu3809 at 906.479 kb on - strand, within Atu3809 at 906.537 kb on + strand at 906.545 kb on - strand at 906.545 kb on - strand at 906.592 kb on - strand at 906.613 kb on + strand at 906.621 kb on - strand at 906.669 kb on - strand at 906.723 kb on + strand at 906.738 kb on - strand at 906.781 kb on - strand at 906.792 kb on + strand at 906.860 kb on - strand, within Atu3810 at 906.871 kb on + strand, within Atu3810 at 906.892 kb on + strand, within Atu3810 at 906.892 kb on + strand, within Atu3810 at 906.900 kb on - strand, within Atu3810 at 906.906 kb on + strand, within Atu3810 at 906.916 kb on + strand, within Atu3810 at 906.916 kb on + strand, within Atu3810 at 906.934 kb on + strand, within Atu3810 at 906.980 kb on + strand, within Atu3810 at 906.988 kb on - strand, within Atu3810 at 907.005 kb on - strand, within Atu3810 at 907.041 kb on + strand, within Atu3810 at 907.092 kb on + strand, within Atu3810 at 907.100 kb on - strand, within Atu3810 at 907.107 kb on - strand, within Atu3810 at 907.207 kb on + strand, within Atu3810 at 907.250 kb on - strand, within Atu3810 at 907.311 kb on + strand, within Atu3810 at 907.425 kb on + strand, within Atu3810 at 907.433 kb on - strand, within Atu3810 at 907.450 kb on - strand, within Atu3810 at 907.452 kb on + strand, within Atu3810 at 907.452 kb on + strand, within Atu3810
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 904,794 + +1.0 904,905 + Atu3808 0.20 -0.0 904,931 + Atu3808 0.23 +0.0 905,023 + Atu3808 0.33 -0.0 905,069 - Atu3808 0.38 +0.8 905,101 - Atu3808 0.42 -1.6 905,124 - Atu3808 0.44 +0.9 905,171 + Atu3808 0.50 +1.4 905,303 + Atu3808 0.64 -0.1 905,311 - Atu3808 0.65 -0.7 905,373 + Atu3808 0.72 -0.5 905,373 + Atu3808 0.72 -3.5 905,381 - Atu3808 0.73 -0.6 905,551 - +1.3 905,560 - +1.4 905,591 + +0.9 905,617 - +1.2 905,629 + -1.0 905,644 - +0.6 905,676 + -0.4 905,684 - +0.2 905,701 - +0.6 905,713 + +0.5 905,713 + +0.4 905,721 - +0.2 905,721 - +0.9 905,721 - -1.1 905,734 - -0.3 905,734 - +0.5 905,746 + +1.1 905,766 - +0.6 905,768 + -0.6 905,776 - -0.5 905,981 + Atu3809 0.27 -0.4 906,007 + Atu3809 0.30 +0.8 906,019 + Atu3809 0.31 -0.7 906,069 + Atu3809 0.37 +0.3 906,082 - Atu3809 0.38 +0.7 906,115 - Atu3809 0.42 -0.2 906,360 + Atu3809 0.70 +1.5 906,425 + Atu3809 0.78 +0.3 906,425 + Atu3809 0.78 +2.3 906,471 + Atu3809 0.83 -0.3 906,479 - Atu3809 0.84 +0.1 906,537 + +0.6 906,545 - -0.6 906,545 - -0.1 906,592 - -0.9 906,613 + -0.6 906,621 - +0.8 906,669 - -1.4 906,723 + -1.2 906,738 - +1.2 906,781 - -0.8 906,792 + -2.6 906,860 - Atu3810 0.15 +2.6 906,871 + Atu3810 0.16 +0.3 906,892 + Atu3810 0.18 +0.4 906,892 + Atu3810 0.18 +4.2 906,900 - Atu3810 0.19 -0.4 906,906 + Atu3810 0.20 -0.2 906,916 + Atu3810 0.21 +0.9 906,916 + Atu3810 0.21 -1.0 906,934 + Atu3810 0.23 +0.1 906,980 + Atu3810 0.28 -1.2 906,988 - Atu3810 0.29 +0.1 907,005 - Atu3810 0.31 -1.7 907,041 + Atu3810 0.35 +0.6 907,092 + Atu3810 0.41 -0.2 907,100 - Atu3810 0.42 -0.6 907,107 - Atu3810 0.43 -0.2 907,207 + Atu3810 0.54 -0.1 907,250 - Atu3810 0.59 +2.5 907,311 + Atu3810 0.65 -0.4 907,425 + Atu3810 0.78 +0.4 907,433 - Atu3810 0.79 -2.3 907,450 - Atu3810 0.81 -1.0 907,452 + Atu3810 0.81 +1.1 907,452 + Atu3810 0.81 +0.7
Or see this region's nucleotide sequence