Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3772 and Atu3773 are separated by 2 nucleotides Atu3773 and Atu3774 are separated by 73 nucleotides Atu3774 and Atu3775 are separated by 59 nucleotides Atu3775 and Atu3776 are separated by 38 nucleotides Atu3776 and Atu3777 are separated by 6 nucleotides
Atu3772: Atu3772 - hypothetical protein, at 855,841 to 856,890
Atu3772
Atu3773: Atu3773 - hypothetical protein, at 856,893 to 857,357
Atu3773
Atu3774: Atu3774 - capsule expression protein, at 857,431 to 858,426
Atu3774
Atu3775: Atu3775 - hypothetical protein, at 858,486 to 858,851
Atu3775
Atu3776: Atu3776 - hypothetical protein, at 858,890 to 859,264
Atu3776
Atu3777: Atu3777 - hypothetical protein, at 859,271 to 860,764
Atu3777
Position (kb) 857
858
859 Strain fitness (log2 ratio) -2
-1
0
1
2 at 856.513 kb on - strand, within Atu3772 at 856.565 kb on + strand, within Atu3772 at 856.608 kb on - strand, within Atu3772 at 856.614 kb on - strand, within Atu3772 at 856.700 kb on + strand, within Atu3772 at 856.772 kb on - strand, within Atu3772 at 856.779 kb on - strand, within Atu3772 at 856.790 kb on + strand at 856.834 kb on - strand at 856.923 kb on + strand at 856.931 kb on - strand at 856.968 kb on - strand, within Atu3773 at 857.245 kb on + strand, within Atu3773 at 857.257 kb on - strand, within Atu3773 at 857.288 kb on - strand, within Atu3773 at 857.366 kb on - strand at 857.366 kb on - strand at 857.428 kb on + strand at 858.523 kb on + strand, within Atu3775 at 858.531 kb on - strand, within Atu3775 at 858.662 kb on - strand, within Atu3775 at 859.016 kb on + strand, within Atu3776 at 859.077 kb on + strand, within Atu3776 at 859.078 kb on - strand, within Atu3776 at 859.078 kb on - strand, within Atu3776 at 859.112 kb on - strand, within Atu3776 at 859.373 kb on - strand at 859.400 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 856,513 - Atu3772 0.64 +0.8 856,565 + Atu3772 0.69 -1.8 856,608 - Atu3772 0.73 -0.5 856,614 - Atu3772 0.74 -0.4 856,700 + Atu3772 0.82 +0.4 856,772 - Atu3772 0.89 +0.1 856,779 - Atu3772 0.89 -0.7 856,790 + -0.3 856,834 - +1.2 856,923 + -0.0 856,931 - +0.3 856,968 - Atu3773 0.16 -0.3 857,245 + Atu3773 0.76 -0.4 857,257 - Atu3773 0.78 -0.1 857,288 - Atu3773 0.85 +1.0 857,366 - +0.3 857,366 - -0.6 857,428 + -2.3 858,523 + Atu3775 0.10 -1.9 858,531 - Atu3775 0.12 +2.6 858,662 - Atu3775 0.48 -0.4 859,016 + Atu3776 0.34 -0.0 859,077 + Atu3776 0.50 +2.6 859,078 - Atu3776 0.50 -0.2 859,078 - Atu3776 0.50 +0.4 859,112 - Atu3776 0.59 +1.0 859,373 - +2.3 859,400 - +1.2
Or see this region's nucleotide sequence