Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3455 and Atu3456 are separated by 217 nucleotides Atu3456 and Atu3457 overlap by 1 nucleotides Atu3457 and Atu3458 are separated by 4 nucleotides
Atu3455: Atu3455 - oligopeptide ABC transporter substrate-binding protein, at 502,841 to 504,439
Atu3455
Atu3456: Atu3456 - ABC transporter permease, at 504,657 to 505,415
Atu3456
Atu3457: Atu3457 - ABC transporter permease, at 505,415 to 506,251
Atu3457
Atu3458: Atu3458 - ABC transporter permease, at 506,256 to 507,143
Atu3458
Position (kb) 504
505
506 Strain fitness (log2 ratio) -2
-1
0
1
2 at 503.784 kb on + strand, within Atu3455 at 503.872 kb on - strand, within Atu3455 at 504.151 kb on - strand, within Atu3455 at 504.157 kb on - strand, within Atu3455 at 504.251 kb on - strand, within Atu3455 at 504.296 kb on - strand at 504.314 kb on - strand at 504.328 kb on - strand at 504.337 kb on - strand at 504.376 kb on + strand at 504.406 kb on - strand at 504.440 kb on + strand at 504.449 kb on - strand at 504.500 kb on + strand at 504.542 kb on + strand at 504.562 kb on - strand at 504.810 kb on - strand, within Atu3456 at 504.820 kb on - strand, within Atu3456 at 504.833 kb on + strand, within Atu3456 at 504.938 kb on + strand, within Atu3456 at 505.008 kb on + strand, within Atu3456 at 505.053 kb on - strand, within Atu3456 at 505.153 kb on - strand, within Atu3456 at 505.187 kb on + strand, within Atu3456 at 505.212 kb on - strand, within Atu3456 at 505.379 kb on - strand at 505.434 kb on - strand at 505.435 kb on + strand at 505.448 kb on + strand at 505.676 kb on + strand, within Atu3457 at 505.788 kb on - strand, within Atu3457 at 505.912 kb on - strand, within Atu3457 at 505.932 kb on - strand, within Atu3457 at 505.932 kb on - strand, within Atu3457 at 505.955 kb on - strand, within Atu3457 at 506.009 kb on - strand, within Atu3457 at 506.010 kb on - strand, within Atu3457 at 506.114 kb on + strand, within Atu3457 at 506.114 kb on + strand, within Atu3457 at 506.160 kb on - strand, within Atu3457 at 506.185 kb on + strand at 506.221 kb on + strand at 506.252 kb on + strand at 506.324 kb on + strand at 506.379 kb on - strand, within Atu3458 at 506.388 kb on - strand, within Atu3458 at 506.398 kb on - strand, within Atu3458
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 503,784 + Atu3455 0.59 -0.9 503,872 - Atu3455 0.64 -0.3 504,151 - Atu3455 0.82 -0.5 504,157 - Atu3455 0.82 -0.3 504,251 - Atu3455 0.88 -0.7 504,296 - -0.5 504,314 - +0.0 504,328 - +0.3 504,337 - +0.3 504,376 + +0.1 504,406 - -1.5 504,440 + +0.8 504,449 - +1.1 504,500 + +0.1 504,542 + +0.6 504,562 - +0.8 504,810 - Atu3456 0.20 +0.4 504,820 - Atu3456 0.21 +1.4 504,833 + Atu3456 0.23 +0.4 504,938 + Atu3456 0.37 +0.4 505,008 + Atu3456 0.46 -0.1 505,053 - Atu3456 0.52 +0.4 505,153 - Atu3456 0.65 +0.8 505,187 + Atu3456 0.70 -0.1 505,212 - Atu3456 0.73 +0.2 505,379 - +1.0 505,434 - +0.6 505,435 + +0.1 505,448 + -0.1 505,676 + Atu3457 0.31 +0.4 505,788 - Atu3457 0.45 -0.0 505,912 - Atu3457 0.59 +1.1 505,932 - Atu3457 0.62 -0.1 505,932 - Atu3457 0.62 -2.0 505,955 - Atu3457 0.65 +2.1 506,009 - Atu3457 0.71 -0.1 506,010 - Atu3457 0.71 +1.7 506,114 + Atu3457 0.84 +0.4 506,114 + Atu3457 0.84 -1.2 506,160 - Atu3457 0.89 -1.1 506,185 + -0.5 506,221 + +1.2 506,252 + -0.5 506,324 + -2.7 506,379 - Atu3458 0.14 +0.5 506,388 - Atu3458 0.15 +1.6 506,398 - Atu3458 0.16 -0.6
Or see this region's nucleotide sequence