Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3320 and Atu3321 are separated by 148 nucleotides Atu3321 and Atu3322 are separated by 620 nucleotides
Atu3320: Atu3320 - fibrinogen binding protein, at 351,017 to 351,982
Atu3320
Atu3321: Atu3321 - hypothetical protein, at 352,131 to 354,152
Atu3321
Atu3322: Atu3322 - ABC transporter permease, at 354,773 to 356,428
Atu3322
Position (kb) 352
353
354
355 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 351.218 kb on - strand, within Atu3320 at 351.265 kb on - strand, within Atu3320 at 351.293 kb on - strand, within Atu3320 at 351.325 kb on + strand, within Atu3320 at 351.325 kb on + strand, within Atu3320 at 351.325 kb on + strand, within Atu3320 at 351.325 kb on + strand, within Atu3320 at 351.325 kb on + strand, within Atu3320 at 351.333 kb on - strand, within Atu3320 at 351.409 kb on + strand, within Atu3320 at 351.469 kb on - strand, within Atu3320 at 351.503 kb on + strand, within Atu3320 at 351.566 kb on + strand, within Atu3320 at 351.574 kb on - strand, within Atu3320 at 351.581 kb on - strand, within Atu3320 at 351.581 kb on - strand, within Atu3320 at 351.584 kb on + strand, within Atu3320 at 351.605 kb on - strand, within Atu3320 at 351.659 kb on + strand, within Atu3320 at 351.679 kb on - strand, within Atu3320 at 351.742 kb on + strand, within Atu3320 at 351.797 kb on + strand, within Atu3320 at 351.830 kb on + strand, within Atu3320 at 351.832 kb on + strand, within Atu3320 at 351.838 kb on - strand, within Atu3320 at 351.840 kb on - strand, within Atu3320 at 351.850 kb on - strand, within Atu3320 at 351.918 kb on - strand at 351.938 kb on + strand at 351.974 kb on - strand at 352.070 kb on + strand at 352.078 kb on - strand at 352.092 kb on + strand at 352.092 kb on + strand at 352.092 kb on + strand at 352.100 kb on - strand at 352.112 kb on - strand at 352.120 kb on - strand at 352.120 kb on - strand at 352.186 kb on - strand at 352.270 kb on + strand at 352.493 kb on + strand, within Atu3321 at 352.527 kb on - strand, within Atu3321 at 352.535 kb on + strand, within Atu3321 at 352.543 kb on - strand, within Atu3321 at 352.587 kb on - strand, within Atu3321 at 352.619 kb on - strand, within Atu3321 at 352.636 kb on - strand, within Atu3321 at 352.714 kb on - strand, within Atu3321 at 352.739 kb on - strand, within Atu3321 at 352.815 kb on + strand, within Atu3321 at 352.815 kb on + strand, within Atu3321 at 352.939 kb on - strand, within Atu3321 at 352.951 kb on + strand, within Atu3321 at 352.951 kb on + strand, within Atu3321 at 352.953 kb on + strand, within Atu3321 at 352.959 kb on - strand, within Atu3321 at 352.959 kb on - strand, within Atu3321 at 353.008 kb on - strand, within Atu3321 at 353.008 kb on - strand, within Atu3321 at 353.075 kb on - strand, within Atu3321 at 353.110 kb on + strand, within Atu3321 at 353.177 kb on + strand, within Atu3321 at 353.209 kb on + strand, within Atu3321 at 353.209 kb on + strand, within Atu3321 at 353.209 kb on + strand, within Atu3321 at 353.217 kb on - strand, within Atu3321 at 353.217 kb on - strand, within Atu3321 at 353.269 kb on + strand, within Atu3321 at 353.611 kb on - strand, within Atu3321 at 353.881 kb on - strand, within Atu3321 at 353.913 kb on + strand, within Atu3321 at 353.913 kb on - strand, within Atu3321 at 354.080 kb on + strand at 354.090 kb on + strand at 354.098 kb on - strand at 354.147 kb on + strand at 354.169 kb on + strand at 354.170 kb on + strand at 354.178 kb on - strand at 354.200 kb on - strand at 354.363 kb on + strand at 354.371 kb on - strand at 354.430 kb on + strand at 354.546 kb on - strand at 354.748 kb on + strand at 354.857 kb on + strand at 354.989 kb on + strand, within Atu3322 at 355.055 kb on - strand, within Atu3322 at 355.068 kb on + strand, within Atu3322
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 351,218 - Atu3320 0.21 +0.2 351,265 - Atu3320 0.26 -1.5 351,293 - Atu3320 0.29 -0.7 351,325 + Atu3320 0.32 -0.3 351,325 + Atu3320 0.32 -0.5 351,325 + Atu3320 0.32 -2.8 351,325 + Atu3320 0.32 +0.2 351,325 + Atu3320 0.32 -0.2 351,333 - Atu3320 0.33 -0.1 351,409 + Atu3320 0.41 -0.8 351,469 - Atu3320 0.47 -0.2 351,503 + Atu3320 0.50 +1.7 351,566 + Atu3320 0.57 -0.8 351,574 - Atu3320 0.58 -1.8 351,581 - Atu3320 0.58 -1.1 351,581 - Atu3320 0.58 -0.1 351,584 + Atu3320 0.59 -0.4 351,605 - Atu3320 0.61 +0.8 351,659 + Atu3320 0.66 +0.6 351,679 - Atu3320 0.69 -0.8 351,742 + Atu3320 0.75 +0.4 351,797 + Atu3320 0.81 -1.2 351,830 + Atu3320 0.84 -1.1 351,832 + Atu3320 0.84 +0.1 351,838 - Atu3320 0.85 -1.4 351,840 - Atu3320 0.85 +0.8 351,850 - Atu3320 0.86 -1.6 351,918 - +1.8 351,938 + -1.1 351,974 - +0.2 352,070 + -2.1 352,078 - +0.5 352,092 + -1.0 352,092 + -0.3 352,092 + -1.8 352,100 - +0.4 352,112 - +1.0 352,120 - +0.3 352,120 - -0.4 352,186 - +0.8 352,270 + +0.1 352,493 + Atu3321 0.18 -0.2 352,527 - Atu3321 0.20 -0.6 352,535 + Atu3321 0.20 -1.5 352,543 - Atu3321 0.20 -1.0 352,587 - Atu3321 0.23 +0.7 352,619 - Atu3321 0.24 +0.5 352,636 - Atu3321 0.25 -0.1 352,714 - Atu3321 0.29 -0.8 352,739 - Atu3321 0.30 +0.1 352,815 + Atu3321 0.34 -2.1 352,815 + Atu3321 0.34 +0.0 352,939 - Atu3321 0.40 -0.1 352,951 + Atu3321 0.41 +1.4 352,951 + Atu3321 0.41 +0.1 352,953 + Atu3321 0.41 -0.1 352,959 - Atu3321 0.41 -0.6 352,959 - Atu3321 0.41 -2.1 353,008 - Atu3321 0.43 -1.8 353,008 - Atu3321 0.43 -0.6 353,075 - Atu3321 0.47 +1.2 353,110 + Atu3321 0.48 -2.5 353,177 + Atu3321 0.52 -0.2 353,209 + Atu3321 0.53 -1.4 353,209 + Atu3321 0.53 -3.4 353,209 + Atu3321 0.53 +0.6 353,217 - Atu3321 0.54 +0.4 353,217 - Atu3321 0.54 -0.1 353,269 + Atu3321 0.56 +0.5 353,611 - Atu3321 0.73 -0.8 353,881 - Atu3321 0.87 +0.2 353,913 + Atu3321 0.88 -0.6 353,913 - Atu3321 0.88 +2.4 354,080 + +0.2 354,090 + +0.4 354,098 - -0.6 354,147 + +0.0 354,169 + -0.2 354,170 + -0.2 354,178 - +0.2 354,200 - +1.2 354,363 + +0.6 354,371 - -3.1 354,430 + -0.5 354,546 - -0.4 354,748 + +2.3 354,857 + +0.0 354,989 + Atu3322 0.13 -1.3 355,055 - Atu3322 0.17 -1.3 355,068 + Atu3322 0.18 +1.4
Or see this region's nucleotide sequence