Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3272 and Atu3273 are separated by 266 nucleotides Atu3273 and Atu3274 overlap by 4 nucleotides
Atu3272: Atu3272 - exopolysaccharide export protein, at 291,854 to 293,050
Atu3272
Atu3273: Atu3273 - HlyD family secretion protein, at 293,317 to 294,594
Atu3273
Atu3274: Atu3274 - AcrB/AcrD/AcrF family protein, at 294,591 to 297,731
Atu3274
Position (kb) 293
294
295 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 292.325 kb on - strand, within Atu3272 at 292.437 kb on - strand, within Atu3272 at 292.526 kb on - strand, within Atu3272 at 292.564 kb on + strand, within Atu3272 at 292.595 kb on - strand, within Atu3272 at 292.627 kb on + strand, within Atu3272 at 292.632 kb on + strand, within Atu3272 at 292.759 kb on + strand, within Atu3272 at 292.759 kb on + strand, within Atu3272 at 292.767 kb on - strand, within Atu3272 at 292.767 kb on - strand, within Atu3272 at 292.767 kb on - strand, within Atu3272 at 293.004 kb on - strand at 293.117 kb on + strand at 293.254 kb on - strand at 293.336 kb on + strand at 293.469 kb on - strand, within Atu3273 at 293.521 kb on + strand, within Atu3273 at 293.529 kb on - strand, within Atu3273 at 293.531 kb on - strand, within Atu3273 at 293.544 kb on + strand, within Atu3273 at 293.608 kb on - strand, within Atu3273 at 293.611 kb on - strand, within Atu3273 at 293.638 kb on + strand, within Atu3273 at 293.645 kb on - strand, within Atu3273 at 293.736 kb on - strand, within Atu3273 at 293.754 kb on + strand, within Atu3273 at 293.756 kb on - strand, within Atu3273 at 293.756 kb on - strand, within Atu3273 at 293.762 kb on - strand, within Atu3273 at 293.780 kb on + strand, within Atu3273 at 293.790 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.865 kb on - strand, within Atu3273 at 293.865 kb on - strand, within Atu3273 at 293.870 kb on - strand, within Atu3273 at 293.870 kb on - strand, within Atu3273 at 293.870 kb on - strand, within Atu3273 at 293.870 kb on - strand, within Atu3273 at 293.870 kb on - strand, within Atu3273 at 293.921 kb on + strand, within Atu3273 at 293.926 kb on + strand, within Atu3273 at 293.926 kb on + strand, within Atu3273 at 293.936 kb on + strand, within Atu3273 at 294.002 kb on + strand, within Atu3273 at 294.065 kb on + strand, within Atu3273 at 294.065 kb on + strand, within Atu3273 at 294.153 kb on + strand, within Atu3273 at 294.198 kb on + strand, within Atu3273 at 294.207 kb on - strand, within Atu3273 at 294.282 kb on - strand, within Atu3273 at 294.377 kb on - strand, within Atu3273 at 294.384 kb on - strand, within Atu3273 at 294.489 kb on - strand at 294.670 kb on + strand at 294.683 kb on + strand at 294.696 kb on - strand at 294.786 kb on - strand at 294.805 kb on - strand at 294.814 kb on + strand at 294.964 kb on + strand, within Atu3274 at 295.002 kb on + strand, within Atu3274 at 295.053 kb on - strand, within Atu3274 at 295.102 kb on + strand, within Atu3274 at 295.123 kb on - strand, within Atu3274 at 295.123 kb on - strand, within Atu3274 at 295.130 kb on + strand, within Atu3274 at 295.130 kb on + strand, within Atu3274 at 295.138 kb on - strand, within Atu3274 at 295.138 kb on - strand, within Atu3274 at 295.138 kb on - strand, within Atu3274 at 295.159 kb on - strand, within Atu3274 at 295.166 kb on + strand, within Atu3274 at 295.194 kb on - strand, within Atu3274 at 295.244 kb on + strand, within Atu3274 at 295.292 kb on + strand, within Atu3274 at 295.335 kb on - strand, within Atu3274 at 295.426 kb on + strand, within Atu3274
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 292,325 - Atu3272 0.39 +1.3 292,437 - Atu3272 0.49 -0.2 292,526 - Atu3272 0.56 +0.7 292,564 + Atu3272 0.59 -0.3 292,595 - Atu3272 0.62 +0.6 292,627 + Atu3272 0.65 +0.3 292,632 + Atu3272 0.65 +0.2 292,759 + Atu3272 0.76 -0.4 292,759 + Atu3272 0.76 -0.3 292,767 - Atu3272 0.76 -0.4 292,767 - Atu3272 0.76 +1.2 292,767 - Atu3272 0.76 +0.5 293,004 - +0.5 293,117 + +0.5 293,254 - -0.7 293,336 + -1.7 293,469 - Atu3273 0.12 -1.0 293,521 + Atu3273 0.16 -1.0 293,529 - Atu3273 0.17 +0.8 293,531 - Atu3273 0.17 +0.5 293,544 + Atu3273 0.18 -0.3 293,608 - Atu3273 0.23 -0.5 293,611 - Atu3273 0.23 +0.3 293,638 + Atu3273 0.25 -2.5 293,645 - Atu3273 0.26 -0.6 293,736 - Atu3273 0.33 -0.4 293,754 + Atu3273 0.34 -0.5 293,756 - Atu3273 0.34 -1.8 293,756 - Atu3273 0.34 -0.5 293,762 - Atu3273 0.35 +0.7 293,780 + Atu3273 0.36 -1.5 293,790 + Atu3273 0.37 +0.3 293,862 + Atu3273 0.43 -2.1 293,862 + Atu3273 0.43 -0.8 293,862 + Atu3273 0.43 +3.3 293,862 + Atu3273 0.43 -0.0 293,862 + Atu3273 0.43 +0.5 293,862 + Atu3273 0.43 +0.5 293,862 + Atu3273 0.43 +0.2 293,862 + Atu3273 0.43 +1.3 293,862 + Atu3273 0.43 -0.7 293,865 - Atu3273 0.43 -2.3 293,865 - Atu3273 0.43 +1.3 293,870 - Atu3273 0.43 +0.2 293,870 - Atu3273 0.43 -1.5 293,870 - Atu3273 0.43 +0.9 293,870 - Atu3273 0.43 -0.2 293,870 - Atu3273 0.43 -0.1 293,921 + Atu3273 0.47 +0.1 293,926 + Atu3273 0.48 +0.1 293,926 + Atu3273 0.48 +0.5 293,936 + Atu3273 0.48 +0.0 294,002 + Atu3273 0.54 -1.2 294,065 + Atu3273 0.59 +1.3 294,065 + Atu3273 0.59 +0.4 294,153 + Atu3273 0.65 +0.4 294,198 + Atu3273 0.69 -1.6 294,207 - Atu3273 0.70 +0.5 294,282 - Atu3273 0.76 -0.4 294,377 - Atu3273 0.83 -0.6 294,384 - Atu3273 0.83 -0.3 294,489 - -0.4 294,670 + -1.0 294,683 + +0.3 294,696 - +0.7 294,786 - +1.3 294,805 - -0.4 294,814 + +0.3 294,964 + Atu3274 0.12 -0.3 295,002 + Atu3274 0.13 -0.1 295,053 - Atu3274 0.15 -1.0 295,102 + Atu3274 0.16 -0.9 295,123 - Atu3274 0.17 -0.6 295,123 - Atu3274 0.17 +0.6 295,130 + Atu3274 0.17 -0.5 295,130 + Atu3274 0.17 -0.5 295,138 - Atu3274 0.17 -1.4 295,138 - Atu3274 0.17 +0.9 295,138 - Atu3274 0.17 -0.3 295,159 - Atu3274 0.18 +0.4 295,166 + Atu3274 0.18 +4.7 295,194 - Atu3274 0.19 -0.2 295,244 + Atu3274 0.21 -0.8 295,292 + Atu3274 0.22 +1.2 295,335 - Atu3274 0.24 -0.9 295,426 + Atu3274 0.27 +1.2
Or see this region's nucleotide sequence