Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3269 and Atu3270 are separated by 59 nucleotides Atu3270 and Atu3271 are separated by 136 nucleotides Atu3271 and Atu3272 are separated by 476 nucleotides
Atu3269: Atu3269 - dipeptide ABC transporter substrate-binding protein, at 288,288 to 289,814
Atu3269
Atu3270: Atu3270 - hypothetical protein, at 289,874 to 290,116
Atu3270
Atu3271: Atu3271 - glycosyltransferase, at 290,253 to 291,377
Atu3271
Atu3272: Atu3272 - exopolysaccharide export protein, at 291,854 to 293,050
Atu3272
Position (kb) 290
291
292 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 289.259 kb on + strand, within Atu3269 at 289.376 kb on + strand, within Atu3269 at 289.379 kb on - strand, within Atu3269 at 289.384 kb on - strand, within Atu3269 at 289.384 kb on - strand, within Atu3269 at 289.384 kb on - strand, within Atu3269 at 289.384 kb on - strand, within Atu3269 at 289.384 kb on - strand, within Atu3269 at 289.437 kb on + strand, within Atu3269 at 289.549 kb on + strand, within Atu3269 at 289.549 kb on - strand, within Atu3269 at 289.626 kb on + strand, within Atu3269 at 289.635 kb on - strand, within Atu3269 at 289.750 kb on + strand at 289.762 kb on + strand at 289.998 kb on + strand, within Atu3270 at 290.006 kb on - strand, within Atu3270 at 290.017 kb on + strand, within Atu3270 at 290.211 kb on - strand at 290.356 kb on - strand at 290.361 kb on + strand at 290.490 kb on - strand, within Atu3271 at 290.520 kb on - strand, within Atu3271 at 290.557 kb on - strand, within Atu3271 at 290.694 kb on + strand, within Atu3271 at 290.698 kb on - strand, within Atu3271 at 290.809 kb on - strand, within Atu3271 at 290.943 kb on + strand, within Atu3271 at 291.022 kb on + strand, within Atu3271 at 291.048 kb on + strand, within Atu3271 at 291.127 kb on - strand, within Atu3271 at 291.153 kb on + strand, within Atu3271 at 291.376 kb on + strand at 291.796 kb on + strand at 291.922 kb on + strand at 292.015 kb on + strand, within Atu3272 at 292.122 kb on - strand, within Atu3272 at 292.136 kb on - strand, within Atu3272 at 292.156 kb on + strand, within Atu3272 at 292.315 kb on - strand, within Atu3272 at 292.325 kb on - strand, within Atu3272
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 289,259 + Atu3269 0.64 +0.1 289,376 + Atu3269 0.71 -0.1 289,379 - Atu3269 0.71 -1.4 289,384 - Atu3269 0.72 +0.9 289,384 - Atu3269 0.72 +1.2 289,384 - Atu3269 0.72 +0.3 289,384 - Atu3269 0.72 -0.2 289,384 - Atu3269 0.72 -1.5 289,437 + Atu3269 0.75 -1.0 289,549 + Atu3269 0.83 +0.2 289,549 - Atu3269 0.83 +0.3 289,626 + Atu3269 0.88 -0.2 289,635 - Atu3269 0.88 -0.3 289,750 + -1.2 289,762 + -1.1 289,998 + Atu3270 0.51 -0.6 290,006 - Atu3270 0.54 -4.3 290,017 + Atu3270 0.59 -0.4 290,211 - -0.5 290,356 - +2.3 290,361 + -0.3 290,490 - Atu3271 0.21 +0.0 290,520 - Atu3271 0.24 -2.0 290,557 - Atu3271 0.27 +0.2 290,694 + Atu3271 0.39 +0.1 290,698 - Atu3271 0.40 -1.5 290,809 - Atu3271 0.49 -0.6 290,943 + Atu3271 0.61 -0.4 291,022 + Atu3271 0.68 -1.7 291,048 + Atu3271 0.71 +0.4 291,127 - Atu3271 0.78 -0.6 291,153 + Atu3271 0.80 +0.6 291,376 + +0.3 291,796 + +0.7 291,922 + -0.3 292,015 + Atu3272 0.13 -1.4 292,122 - Atu3272 0.22 +0.4 292,136 - Atu3272 0.24 -1.3 292,156 + Atu3272 0.25 -0.3 292,315 - Atu3272 0.39 -0.0 292,325 - Atu3272 0.39 +1.3
Or see this region's nucleotide sequence