Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3188 and Atu3189 are separated by 60 nucleotides Atu3189 and Atu3190 are separated by 321 nucleotides Atu3190 and Atu3191 are separated by 209 nucleotides
Atu3188: Atu3188 - glycerol-3-phosphate transporter ATP-binding subunit, at 197,716 to 198,777
Atu3188
Atu3189: Atu3189 - hypothetical protein, at 198,838 to 199,581
Atu3189
Atu3190: Atu3190 - hypothetical protein, at 199,903 to 200,346
Atu3190
Atu3191: Atu3191 - outer membrane protein, at 200,556 to 201,242
Atu3191
Position (kb) 198
199
200 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 197.898 kb on + strand, within Atu3188 at 197.958 kb on - strand, within Atu3188 at 198.032 kb on - strand, within Atu3188 at 198.059 kb on + strand, within Atu3188 at 198.059 kb on + strand, within Atu3188 at 198.140 kb on - strand, within Atu3188 at 198.145 kb on + strand, within Atu3188 at 198.220 kb on - strand, within Atu3188 at 198.226 kb on + strand, within Atu3188 at 198.290 kb on + strand, within Atu3188 at 198.300 kb on + strand, within Atu3188 at 198.376 kb on - strand, within Atu3188 at 198.470 kb on - strand, within Atu3188 at 198.544 kb on - strand, within Atu3188 at 198.593 kb on - strand, within Atu3188 at 198.595 kb on + strand, within Atu3188 at 198.595 kb on + strand, within Atu3188 at 198.632 kb on + strand, within Atu3188 at 198.640 kb on - strand, within Atu3188 at 198.640 kb on - strand, within Atu3188 at 198.689 kb on + strand at 198.689 kb on + strand at 198.689 kb on + strand at 198.689 kb on + strand at 198.694 kb on + strand at 198.702 kb on - strand at 198.720 kb on - strand at 198.732 kb on + strand at 198.732 kb on + strand at 198.732 kb on + strand at 198.740 kb on - strand at 198.740 kb on - strand at 198.740 kb on - strand at 198.789 kb on + strand at 198.833 kb on - strand at 198.833 kb on - strand at 198.868 kb on + strand at 199.093 kb on + strand, within Atu3189 at 199.093 kb on + strand, within Atu3189 at 199.093 kb on + strand, within Atu3189 at 199.160 kb on + strand, within Atu3189 at 199.236 kb on + strand, within Atu3189 at 199.267 kb on - strand, within Atu3189 at 199.268 kb on - strand, within Atu3189 at 199.369 kb on + strand, within Atu3189 at 199.376 kb on - strand, within Atu3189 at 199.377 kb on - strand, within Atu3189 at 199.387 kb on - strand, within Atu3189 at 199.412 kb on + strand, within Atu3189 at 199.451 kb on + strand, within Atu3189 at 199.459 kb on - strand, within Atu3189 at 199.569 kb on + strand at 199.815 kb on + strand at 199.867 kb on + strand at 199.997 kb on - strand, within Atu3190 at 200.021 kb on + strand, within Atu3190 at 200.022 kb on - strand, within Atu3190 at 200.095 kb on - strand, within Atu3190 at 200.136 kb on + strand, within Atu3190 at 200.136 kb on + strand, within Atu3190 at 200.144 kb on - strand, within Atu3190 at 200.144 kb on - strand, within Atu3190 at 200.144 kb on - strand, within Atu3190 at 200.157 kb on + strand, within Atu3190 at 200.248 kb on - strand, within Atu3190 at 200.252 kb on + strand, within Atu3190 at 200.291 kb on + strand, within Atu3190 at 200.312 kb on + strand at 200.366 kb on - strand at 200.443 kb on + strand at 200.536 kb on + strand at 200.537 kb on + strand at 200.545 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 197,898 + Atu3188 0.17 -0.3 197,958 - Atu3188 0.23 -0.5 198,032 - Atu3188 0.30 -2.8 198,059 + Atu3188 0.32 +0.2 198,059 + Atu3188 0.32 -1.2 198,140 - Atu3188 0.40 -1.2 198,145 + Atu3188 0.40 +0.6 198,220 - Atu3188 0.47 +1.4 198,226 + Atu3188 0.48 -1.1 198,290 + Atu3188 0.54 +0.5 198,300 + Atu3188 0.55 -0.7 198,376 - Atu3188 0.62 +0.5 198,470 - Atu3188 0.71 -0.3 198,544 - Atu3188 0.78 -0.6 198,593 - Atu3188 0.83 -0.3 198,595 + Atu3188 0.83 -0.4 198,595 + Atu3188 0.83 -0.9 198,632 + Atu3188 0.86 -0.8 198,640 - Atu3188 0.87 -0.3 198,640 - Atu3188 0.87 +0.6 198,689 + +0.7 198,689 + -0.3 198,689 + -0.5 198,689 + -1.9 198,694 + -0.1 198,702 - +1.3 198,720 - -0.7 198,732 + +0.3 198,732 + +0.4 198,732 + -0.2 198,740 - -0.6 198,740 - -2.0 198,740 - +1.8 198,789 + +0.2 198,833 - +0.6 198,833 - +0.3 198,868 + +1.1 199,093 + Atu3189 0.34 -0.6 199,093 + Atu3189 0.34 +0.2 199,093 + Atu3189 0.34 -0.1 199,160 + Atu3189 0.43 -0.3 199,236 + Atu3189 0.53 +1.0 199,267 - Atu3189 0.58 -0.4 199,268 - Atu3189 0.58 +0.6 199,369 + Atu3189 0.71 +0.5 199,376 - Atu3189 0.72 -0.4 199,377 - Atu3189 0.72 +0.6 199,387 - Atu3189 0.74 -0.6 199,412 + Atu3189 0.77 -1.2 199,451 + Atu3189 0.82 -2.0 199,459 - Atu3189 0.83 -2.2 199,569 + +1.0 199,815 + -1.2 199,867 + -1.5 199,997 - Atu3190 0.21 +0.9 200,021 + Atu3190 0.27 -1.3 200,022 - Atu3190 0.27 -1.0 200,095 - Atu3190 0.43 +0.7 200,136 + Atu3190 0.52 +0.0 200,136 + Atu3190 0.52 +0.6 200,144 - Atu3190 0.54 +1.0 200,144 - Atu3190 0.54 +1.4 200,144 - Atu3190 0.54 +1.3 200,157 + Atu3190 0.57 -1.8 200,248 - Atu3190 0.78 -2.2 200,252 + Atu3190 0.79 -0.0 200,291 + Atu3190 0.87 +2.1 200,312 + -0.4 200,366 - -0.3 200,443 + +0.8 200,536 + -1.2 200,537 + -1.8 200,545 - -0.3
Or see this region's nucleotide sequence