Strain Fitness in Agrobacterium fabrum C58 around Atu3079

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3078 and Atu3079 are separated by 9 nucleotidesAtu3079 and Atu3080 are separated by 102 nucleotides Atu3078: Atu3078 - LysR family transcriptional regulator, at 84,258 to 85,136 Atu3078 Atu3079: Atu3079 - chromate transport protein, at 85,146 to 86,363 Atu3079 Atu3080: Atu3080 - hypothetical protein, at 86,466 to 87,689 Atu3080 Position (kb) 85 86 87Strain fitness (log2 ratio) -2 -1 0 1 2at 84.149 kb on - strandat 84.195 kb on + strandat 84.347 kb on - strand, within Atu3078at 84.433 kb on + strand, within Atu3078at 84.441 kb on - strand, within Atu3078at 84.453 kb on + strand, within Atu3078at 84.523 kb on - strand, within Atu3078at 84.727 kb on + strand, within Atu3078at 84.737 kb on + strand, within Atu3078at 84.822 kb on - strand, within Atu3078at 85.010 kb on + strand, within Atu3078at 85.016 kb on + strand, within Atu3078at 85.120 kb on - strandat 85.121 kb on + strandat 85.144 kb on + strandat 85.156 kb on - strandat 85.182 kb on + strandat 85.182 kb on + strandat 85.190 kb on - strandat 85.249 kb on - strandat 85.288 kb on + strand, within Atu3079at 85.467 kb on - strand, within Atu3079at 85.473 kb on + strand, within Atu3079at 85.503 kb on + strand, within Atu3079at 85.504 kb on - strand, within Atu3079at 85.608 kb on + strand, within Atu3079at 85.690 kb on + strand, within Atu3079at 85.693 kb on - strand, within Atu3079at 85.698 kb on - strand, within Atu3079at 85.721 kb on + strand, within Atu3079at 85.782 kb on + strand, within Atu3079at 85.782 kb on + strand, within Atu3079at 85.814 kb on - strand, within Atu3079at 85.944 kb on + strand, within Atu3079at 85.990 kb on - strand, within Atu3079at 86.108 kb on + strand, within Atu3079at 86.108 kb on + strand, within Atu3079at 86.108 kb on + strand, within Atu3079at 86.108 kb on + strand, within Atu3079at 86.113 kb on + strand, within Atu3079at 86.113 kb on + strand, within Atu3079at 86.113 kb on + strand, within Atu3079at 86.113 kb on + strand, within Atu3079at 86.113 kb on + strand, within Atu3079at 86.116 kb on - strand, within Atu3079at 86.116 kb on - strand, within Atu3079at 86.116 kb on - strand, within Atu3079at 86.121 kb on - strand, within Atu3079at 86.121 kb on - strand, within Atu3079at 86.121 kb on - strand, within Atu3079at 86.121 kb on - strand, within Atu3079at 86.129 kb on + strand, within Atu3079at 86.165 kb on + strand, within Atu3079at 86.167 kb on + strand, within Atu3079at 86.225 kb on + strand, within Atu3079at 86.267 kb on + strandat 86.335 kb on + strandat 86.343 kb on - strandat 86.343 kb on - strandat 86.374 kb on + strandat 86.379 kb on + strandat 86.462 kb on + strandat 86.462 kb on + strandat 86.470 kb on - strandat 86.480 kb on - strandat 86.496 kb on - strandat 86.501 kb on - strandat 86.506 kb on - strandat 86.523 kb on + strandat 86.560 kb on - strandat 86.631 kb on + strand, within Atu3080at 86.631 kb on + strand, within Atu3080at 86.631 kb on + strand, within Atu3080at 86.639 kb on - strand, within Atu3080at 86.639 kb on - strand, within Atu3080at 86.733 kb on - strand, within Atu3080at 86.766 kb on + strand, within Atu3080at 86.769 kb on - strand, within Atu3080at 86.791 kb on + strand, within Atu3080at 86.908 kb on - strand, within Atu3080at 86.936 kb on + strand, within Atu3080at 86.936 kb on + strand, within Atu3080at 86.936 kb on + strand, within Atu3080at 86.960 kb on - strand, within Atu3080at 86.965 kb on - strand, within Atu3080at 86.965 kb on - strand, within Atu3080at 87.001 kb on - strand, within Atu3080at 87.027 kb on + strand, within Atu3080at 87.027 kb on + strand, within Atu3080at 87.078 kb on - strand, within Atu3080at 87.314 kb on - strand, within Atu3080at 87.360 kb on + strand, within Atu3080at 87.360 kb on + strand, within Atu3080

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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84,149 - +0.3
84,195 + +0.3
84,347 - Atu3078 0.10 +0.4
84,433 + Atu3078 0.20 +0.5
84,441 - Atu3078 0.21 +0.9
84,453 + Atu3078 0.22 +1.3
84,523 - Atu3078 0.30 -0.2
84,727 + Atu3078 0.53 -0.5
84,737 + Atu3078 0.54 +0.4
84,822 - Atu3078 0.64 -0.4
85,010 + Atu3078 0.86 +0.3
85,016 + Atu3078 0.86 -0.4
85,120 - -0.1
85,121 + +1.9
85,144 + -2.1
85,156 - +0.9
85,182 + -0.5
85,182 + -1.3
85,190 - +0.8
85,249 - -0.3
85,288 + Atu3079 0.12 +1.2
85,467 - Atu3079 0.26 +0.5
85,473 + Atu3079 0.27 +0.2
85,503 + Atu3079 0.29 -1.1
85,504 - Atu3079 0.29 -1.5
85,608 + Atu3079 0.38 +0.5
85,690 + Atu3079 0.45 -0.8
85,693 - Atu3079 0.45 +0.6
85,698 - Atu3079 0.45 +0.5
85,721 + Atu3079 0.47 -1.8
85,782 + Atu3079 0.52 -0.6
85,782 + Atu3079 0.52 -0.3
85,814 - Atu3079 0.55 -1.2
85,944 + Atu3079 0.66 -0.6
85,990 - Atu3079 0.69 -2.3
86,108 + Atu3079 0.79 +0.2
86,108 + Atu3079 0.79 -2.0
86,108 + Atu3079 0.79 -0.9
86,108 + Atu3079 0.79 -0.1
86,113 + Atu3079 0.79 -1.0
86,113 + Atu3079 0.79 -0.3
86,113 + Atu3079 0.79 -0.6
86,113 + Atu3079 0.79 -1.0
86,113 + Atu3079 0.79 -0.1
86,116 - Atu3079 0.80 +0.4
86,116 - Atu3079 0.80 -2.2
86,116 - Atu3079 0.80 -1.0
86,121 - Atu3079 0.80 -2.0
86,121 - Atu3079 0.80 -2.0
86,121 - Atu3079 0.80 +0.3
86,121 - Atu3079 0.80 +0.3
86,129 + Atu3079 0.81 +0.0
86,165 + Atu3079 0.84 -1.3
86,167 + Atu3079 0.84 +2.2
86,225 + Atu3079 0.89 +0.3
86,267 + +0.4
86,335 + +1.3
86,343 - -2.6
86,343 - +0.3
86,374 + +2.4
86,379 + +0.8
86,462 + -0.0
86,462 + -0.1
86,470 - +0.3
86,480 - +0.6
86,496 - -0.2
86,501 - -0.8
86,506 - +0.7
86,523 + -1.3
86,560 - +1.3
86,631 + Atu3080 0.13 -0.1
86,631 + Atu3080 0.13 +0.9
86,631 + Atu3080 0.13 +0.4
86,639 - Atu3080 0.14 -0.7
86,639 - Atu3080 0.14 +1.2
86,733 - Atu3080 0.22 +0.1
86,766 + Atu3080 0.25 -0.1
86,769 - Atu3080 0.25 +0.7
86,791 + Atu3080 0.27 +2.5
86,908 - Atu3080 0.36 -0.3
86,936 + Atu3080 0.38 +0.6
86,936 + Atu3080 0.38 -1.0
86,936 + Atu3080 0.38 +1.1
86,960 - Atu3080 0.40 +0.0
86,965 - Atu3080 0.41 +0.6
86,965 - Atu3080 0.41 +0.8
87,001 - Atu3080 0.44 +0.5
87,027 + Atu3080 0.46 +0.2
87,027 + Atu3080 0.46 -0.2
87,078 - Atu3080 0.50 -0.2
87,314 - Atu3080 0.69 +0.7
87,360 + Atu3080 0.73 +1.5
87,360 + Atu3080 0.73 +0.6

Or see this region's nucleotide sequence