Strain Fitness in Agrobacterium fabrum C58 around Atu1560

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1558 and Atu1559 are separated by 11 nucleotidesAtu1559 and Atu1560 are separated by 123 nucleotidesAtu1560 and Atu1561 are separated by 23 nucleotidesAtu1561 and Atu1562 overlap by 1 nucleotides Atu1558: Atu1558 - permease, at 1,545,618 to 1,546,514 Atu1558 Atu1559: Atu1559 - hypothetical protein, at 1,546,526 to 1,546,984 Atu1559 Atu1560: Atu1560 - phytoene synthase, at 1,547,108 to 1,547,953 Atu1560 Atu1561: Atu1561 - hypothetical protein, at 1,547,977 to 1,548,369 Atu1561 Atu1562: Atu1562 - protein-export membrane protein SECD, at 1,548,369 to 1,550,942 Atu1562 Position (kb) 1547 1548Strain fitness (log2 ratio) -1 0 1 2at 1546.444 kb on + strandat 1546.481 kb on - strandat 1546.507 kb on - strandat 1546.533 kb on + strandat 1546.533 kb on + strandat 1546.541 kb on - strandat 1546.736 kb on + strand, within Atu1559at 1546.856 kb on + strand, within Atu1559at 1547.078 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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1,546,444 + +0.2
1,546,481 - -1.3
1,546,507 - +1.1
1,546,533 + -0.3
1,546,533 + +0.3
1,546,541 - +2.0
1,546,736 + Atu1559 0.46 +1.1
1,546,856 + Atu1559 0.72 +0.5
1,547,078 - +0.6

Or see this region's nucleotide sequence