Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0700 and Atu0701 are separated by 86 nucleotides Atu0701 and Atu0702 are separated by 276 nucleotides
Atu0700: Atu0700 - two component sensor kinase, at 699,319 to 700,986
Atu0700
Atu0701: Atu0701 - GGDEF family protein, at 701,073 to 702,425
Atu0701
Atu0702: Atu0702 - calcium-binding protein, regucalcin, at 702,702 to 703,589
Atu0702
Position (kb) 701
702
703 Strain fitness (log2 ratio) -2
-1
0
1 at 700.091 kb on + strand, within Atu0700 at 700.116 kb on + strand, within Atu0700 at 700.121 kb on + strand, within Atu0700 at 700.177 kb on + strand, within Atu0700 at 700.185 kb on - strand, within Atu0700 at 700.192 kb on - strand, within Atu0700 at 700.339 kb on - strand, within Atu0700 at 700.380 kb on - strand, within Atu0700 at 700.387 kb on - strand, within Atu0700 at 700.512 kb on + strand, within Atu0700 at 700.618 kb on - strand, within Atu0700 at 700.674 kb on - strand, within Atu0700 at 700.846 kb on + strand at 700.854 kb on - strand at 700.905 kb on + strand at 700.905 kb on + strand at 701.012 kb on - strand at 701.023 kb on - strand at 701.054 kb on + strand at 701.132 kb on - strand at 701.142 kb on - strand at 701.142 kb on - strand at 701.162 kb on + strand at 701.177 kb on + strand at 701.438 kb on + strand, within Atu0701 at 701.446 kb on - strand, within Atu0701 at 701.489 kb on + strand, within Atu0701 at 701.654 kb on + strand, within Atu0701 at 701.746 kb on + strand, within Atu0701 at 701.885 kb on + strand, within Atu0701 at 701.888 kb on - strand, within Atu0701 at 701.888 kb on - strand, within Atu0701 at 701.893 kb on - strand, within Atu0701 at 701.903 kb on + strand, within Atu0701 at 702.038 kb on - strand, within Atu0701 at 702.087 kb on - strand, within Atu0701 at 702.125 kb on - strand, within Atu0701 at 702.126 kb on + strand, within Atu0701 at 702.148 kb on - strand, within Atu0701 at 702.161 kb on + strand, within Atu0701 at 702.161 kb on + strand, within Atu0701 at 702.161 kb on + strand, within Atu0701 at 702.169 kb on - strand, within Atu0701 at 702.335 kb on + strand at 702.343 kb on - strand at 702.440 kb on + strand at 702.516 kb on - strand at 702.596 kb on - strand at 702.625 kb on - strand at 702.709 kb on - strand at 702.724 kb on + strand at 702.764 kb on - strand at 702.947 kb on + strand, within Atu0702 at 702.992 kb on - strand, within Atu0702 at 703.028 kb on - strand, within Atu0702 at 703.083 kb on - strand, within Atu0702 at 703.083 kb on - strand, within Atu0702 at 703.107 kb on - strand, within Atu0702 at 703.170 kb on - strand, within Atu0702 at 703.231 kb on + strand, within Atu0702 at 703.376 kb on + strand, within Atu0702
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 700,091 + Atu0700 0.46 -1.6 700,116 + Atu0700 0.48 +0.2 700,121 + Atu0700 0.48 -0.4 700,177 + Atu0700 0.51 +1.2 700,185 - Atu0700 0.52 -0.5 700,192 - Atu0700 0.52 +0.8 700,339 - Atu0700 0.61 +0.1 700,380 - Atu0700 0.64 +0.0 700,387 - Atu0700 0.64 +1.0 700,512 + Atu0700 0.72 +0.3 700,618 - Atu0700 0.78 -2.2 700,674 - Atu0700 0.81 -0.7 700,846 + -1.3 700,854 - -0.4 700,905 + +0.4 700,905 + -0.4 701,012 - -0.9 701,023 - -0.8 701,054 + +0.6 701,132 - -0.1 701,142 - -1.2 701,142 - -0.8 701,162 + -1.0 701,177 + -0.7 701,438 + Atu0701 0.27 -0.9 701,446 - Atu0701 0.28 -0.4 701,489 + Atu0701 0.31 -1.2 701,654 + Atu0701 0.43 +1.6 701,746 + Atu0701 0.50 -1.3 701,885 + Atu0701 0.60 -0.7 701,888 - Atu0701 0.60 -0.5 701,888 - Atu0701 0.60 -0.5 701,893 - Atu0701 0.61 -2.3 701,903 + Atu0701 0.61 -0.0 702,038 - Atu0701 0.71 -0.9 702,087 - Atu0701 0.75 -0.1 702,125 - Atu0701 0.78 -1.8 702,126 + Atu0701 0.78 -1.6 702,148 - Atu0701 0.79 -1.9 702,161 + Atu0701 0.80 -1.2 702,161 + Atu0701 0.80 -0.0 702,161 + Atu0701 0.80 +0.6 702,169 - Atu0701 0.81 -1.2 702,335 + -0.8 702,343 - +0.2 702,440 + -0.3 702,516 - -1.4 702,596 - +0.3 702,625 - +0.2 702,709 - +1.4 702,724 + +0.5 702,764 - +0.8 702,947 + Atu0702 0.28 -0.5 702,992 - Atu0702 0.33 -1.0 703,028 - Atu0702 0.37 -0.8 703,083 - Atu0702 0.43 -1.7 703,083 - Atu0702 0.43 -0.3 703,107 - Atu0702 0.46 -0.6 703,170 - Atu0702 0.53 -0.7 703,231 + Atu0702 0.60 -0.6 703,376 + Atu0702 0.76 +0.4
Or see this region's nucleotide sequence