Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0283 and Atu0284 are separated by 78 nucleotides Atu0284 and Atu0285 are separated by 50 nucleotides Atu0285 and Atu0286 are separated by 3 nucleotides
Atu0283: Atu0283 - hypothetical protein, at 277,369 to 277,818
Atu0283
Atu0284: Atu0284 - tryptophan-rich sensory protein, at 277,897 to 278,349
Atu0284
Atu0285: Atu0285 - hypothetical protein, at 278,400 to 279,494
Atu0285
Atu0286: Atu0286 - hypothetical protein, at 279,498 to 280,619
Atu0286
Position (kb) 278
279
280 Strain fitness (log2 ratio) -2
-1
0
1
2 at 277.409 kb on - strand at 277.452 kb on + strand, within Atu0283 at 277.452 kb on + strand, within Atu0283 at 277.452 kb on + strand, within Atu0283 at 277.460 kb on - strand, within Atu0283 at 277.460 kb on - strand, within Atu0283 at 277.460 kb on - strand, within Atu0283 at 277.460 kb on - strand, within Atu0283 at 277.548 kb on + strand, within Atu0283 at 277.567 kb on + strand, within Atu0283 at 277.579 kb on + strand, within Atu0283 at 277.662 kb on - strand, within Atu0283 at 277.695 kb on + strand, within Atu0283 at 277.703 kb on - strand, within Atu0283 at 277.749 kb on + strand, within Atu0283 at 277.752 kb on - strand, within Atu0283 at 277.823 kb on - strand at 277.834 kb on + strand at 277.842 kb on - strand at 277.854 kb on + strand at 277.867 kb on + strand at 277.873 kb on + strand at 277.877 kb on + strand at 277.900 kb on + strand at 277.908 kb on + strand at 277.908 kb on - strand at 277.927 kb on - strand at 277.950 kb on + strand, within Atu0284 at 277.951 kb on + strand, within Atu0284 at 277.951 kb on + strand, within Atu0284 at 277.951 kb on + strand, within Atu0284 at 277.959 kb on - strand, within Atu0284 at 277.993 kb on + strand, within Atu0284 at 277.996 kb on + strand, within Atu0284 at 278.036 kb on - strand, within Atu0284 at 278.117 kb on + strand, within Atu0284 at 278.119 kb on + strand, within Atu0284 at 278.125 kb on - strand, within Atu0284 at 278.126 kb on - strand, within Atu0284 at 278.198 kb on + strand, within Atu0284 at 278.201 kb on - strand, within Atu0284 at 278.206 kb on - strand, within Atu0284 at 278.419 kb on - strand at 278.421 kb on + strand at 278.433 kb on + strand at 278.488 kb on - strand at 278.509 kb on - strand at 278.592 kb on + strand, within Atu0285 at 278.609 kb on - strand, within Atu0285 at 278.619 kb on + strand, within Atu0285 at 278.690 kb on + strand, within Atu0285 at 278.692 kb on + strand, within Atu0285 at 278.692 kb on + strand, within Atu0285 at 278.700 kb on - strand, within Atu0285 at 278.700 kb on - strand, within Atu0285 at 278.700 kb on - strand, within Atu0285 at 278.751 kb on - strand, within Atu0285 at 278.826 kb on + strand, within Atu0285 at 278.836 kb on + strand, within Atu0285 at 278.890 kb on - strand, within Atu0285 at 279.001 kb on + strand, within Atu0285 at 279.026 kb on + strand, within Atu0285 at 279.054 kb on + strand, within Atu0285 at 279.101 kb on + strand, within Atu0285 at 279.101 kb on + strand, within Atu0285 at 279.174 kb on + strand, within Atu0285 at 279.174 kb on + strand, within Atu0285 at 279.238 kb on + strand, within Atu0285 at 279.570 kb on + strand at 279.583 kb on + strand at 279.603 kb on - strand at 279.630 kb on - strand, within Atu0286 at 279.647 kb on - strand, within Atu0286 at 279.728 kb on + strand, within Atu0286 at 279.753 kb on + strand, within Atu0286 at 279.761 kb on - strand, within Atu0286 at 279.772 kb on + strand, within Atu0286 at 279.772 kb on + strand, within Atu0286 at 279.772 kb on + strand, within Atu0286 at 279.772 kb on + strand, within Atu0286 at 279.772 kb on + strand, within Atu0286 at 279.772 kb on + strand, within Atu0286 at 279.780 kb on - strand, within Atu0286 at 279.780 kb on - strand, within Atu0286 at 279.780 kb on - strand, within Atu0286 at 279.801 kb on + strand, within Atu0286 at 279.821 kb on + strand, within Atu0286 at 279.857 kb on - strand, within Atu0286 at 279.893 kb on + strand, within Atu0286 at 279.893 kb on + strand, within Atu0286 at 279.893 kb on + strand, within Atu0286 at 279.893 kb on + strand, within Atu0286 at 279.893 kb on + strand, within Atu0286 at 279.893 kb on + strand, within Atu0286 at 279.893 kb on + strand, within Atu0286 at 279.901 kb on - strand, within Atu0286 at 279.901 kb on - strand, within Atu0286 at 279.901 kb on - strand, within Atu0286 at 279.911 kb on - strand, within Atu0286 at 279.921 kb on - strand, within Atu0286 at 280.004 kb on - strand, within Atu0286 at 280.142 kb on + strand, within Atu0286 at 280.142 kb on + strand, within Atu0286 at 280.208 kb on + strand, within Atu0286 at 280.230 kb on - strand, within Atu0286 at 280.258 kb on + strand, within Atu0286 at 280.258 kb on + strand, within Atu0286 at 280.266 kb on - strand, within Atu0286 at 280.266 kb on - strand, within Atu0286 at 280.266 kb on - strand, within Atu0286 at 280.332 kb on + strand, within Atu0286 at 280.332 kb on + strand, within Atu0286 at 280.332 kb on + strand, within Atu0286 at 280.332 kb on + strand, within Atu0286 at 280.332 kb on + strand, within Atu0286 at 280.332 kb on + strand, within Atu0286 at 280.340 kb on - strand, within Atu0286 at 280.340 kb on - strand, within Atu0286 at 280.340 kb on - strand, within Atu0286 at 280.415 kb on + strand, within Atu0286 at 280.421 kb on - strand, within Atu0286 at 280.453 kb on - strand, within Atu0286 at 280.461 kb on + strand, within Atu0286
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 277,409 - +0.7 277,452 + Atu0283 0.18 -1.1 277,452 + Atu0283 0.18 +1.5 277,452 + Atu0283 0.18 -0.9 277,460 - Atu0283 0.20 +1.6 277,460 - Atu0283 0.20 +2.7 277,460 - Atu0283 0.20 -0.3 277,460 - Atu0283 0.20 -1.2 277,548 + Atu0283 0.40 +0.2 277,567 + Atu0283 0.44 +0.0 277,579 + Atu0283 0.47 -0.7 277,662 - Atu0283 0.65 -0.6 277,695 + Atu0283 0.72 -1.6 277,703 - Atu0283 0.74 -0.6 277,749 + Atu0283 0.84 +0.1 277,752 - Atu0283 0.85 -2.2 277,823 - +0.7 277,834 + +0.5 277,842 - -1.0 277,854 + -1.4 277,867 + -1.0 277,873 + -0.2 277,877 + -0.7 277,900 + +1.1 277,908 + +0.3 277,908 - -0.6 277,927 - +1.9 277,950 + Atu0284 0.12 +1.8 277,951 + Atu0284 0.12 -1.3 277,951 + Atu0284 0.12 -0.8 277,951 + Atu0284 0.12 +0.3 277,959 - Atu0284 0.14 +1.7 277,993 + Atu0284 0.21 -0.2 277,996 + Atu0284 0.22 -0.4 278,036 - Atu0284 0.31 +0.9 278,117 + Atu0284 0.49 -0.7 278,119 + Atu0284 0.49 -1.6 278,125 - Atu0284 0.50 -0.1 278,126 - Atu0284 0.51 -2.6 278,198 + Atu0284 0.66 +0.2 278,201 - Atu0284 0.67 +0.1 278,206 - Atu0284 0.68 -1.2 278,419 - -0.3 278,421 + +2.1 278,433 + -0.3 278,488 - +0.0 278,509 - +1.3 278,592 + Atu0285 0.18 -1.0 278,609 - Atu0285 0.19 +0.5 278,619 + Atu0285 0.20 -1.2 278,690 + Atu0285 0.26 +0.0 278,692 + Atu0285 0.27 +0.8 278,692 + Atu0285 0.27 +0.1 278,700 - Atu0285 0.27 -1.3 278,700 - Atu0285 0.27 +0.6 278,700 - Atu0285 0.27 +0.5 278,751 - Atu0285 0.32 -0.6 278,826 + Atu0285 0.39 -1.0 278,836 + Atu0285 0.40 -0.1 278,890 - Atu0285 0.45 -0.1 279,001 + Atu0285 0.55 -0.9 279,026 + Atu0285 0.57 -0.4 279,054 + Atu0285 0.60 -0.6 279,101 + Atu0285 0.64 +1.1 279,101 + Atu0285 0.64 -0.5 279,174 + Atu0285 0.71 -2.1 279,174 + Atu0285 0.71 -0.9 279,238 + Atu0285 0.77 +0.1 279,570 + -0.8 279,583 + -0.1 279,603 - -0.9 279,630 - Atu0286 0.12 +0.2 279,647 - Atu0286 0.13 +0.3 279,728 + Atu0286 0.20 -0.2 279,753 + Atu0286 0.23 -2.6 279,761 - Atu0286 0.23 +0.1 279,772 + Atu0286 0.24 +0.1 279,772 + Atu0286 0.24 -0.6 279,772 + Atu0286 0.24 +1.1 279,772 + Atu0286 0.24 +0.3 279,772 + Atu0286 0.24 -1.2 279,772 + Atu0286 0.24 -1.3 279,780 - Atu0286 0.25 +1.0 279,780 - Atu0286 0.25 +0.7 279,780 - Atu0286 0.25 -0.7 279,801 + Atu0286 0.27 -2.7 279,821 + Atu0286 0.29 +0.0 279,857 - Atu0286 0.32 -1.0 279,893 + Atu0286 0.35 +2.5 279,893 + Atu0286 0.35 +0.3 279,893 + Atu0286 0.35 +0.9 279,893 + Atu0286 0.35 -1.2 279,893 + Atu0286 0.35 -0.8 279,893 + Atu0286 0.35 +0.2 279,893 + Atu0286 0.35 -0.4 279,901 - Atu0286 0.36 +0.0 279,901 - Atu0286 0.36 -0.1 279,901 - Atu0286 0.36 +1.3 279,911 - Atu0286 0.37 +0.1 279,921 - Atu0286 0.38 +0.5 280,004 - Atu0286 0.45 -0.4 280,142 + Atu0286 0.57 +0.9 280,142 + Atu0286 0.57 +1.5 280,208 + Atu0286 0.63 -0.5 280,230 - Atu0286 0.65 +1.5 280,258 + Atu0286 0.68 -0.7 280,258 + Atu0286 0.68 +0.3 280,266 - Atu0286 0.68 -0.9 280,266 - Atu0286 0.68 +0.8 280,266 - Atu0286 0.68 +1.0 280,332 + Atu0286 0.74 +2.2 280,332 + Atu0286 0.74 +1.1 280,332 + Atu0286 0.74 +1.9 280,332 + Atu0286 0.74 -0.0 280,332 + Atu0286 0.74 +0.1 280,332 + Atu0286 0.74 +1.1 280,340 - Atu0286 0.75 -0.2 280,340 - Atu0286 0.75 +1.1 280,340 - Atu0286 0.75 -0.3 280,415 + Atu0286 0.82 -1.0 280,421 - Atu0286 0.82 -1.3 280,453 - Atu0286 0.85 -1.4 280,461 + Atu0286 0.86 -1.8
Or see this region's nucleotide sequence