Strain Fitness in Agrobacterium fabrum C58 around Atu0216

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0215 and Atu0216 are separated by 63 nucleotidesAtu0216 and Atu0217 are separated by 9 nucleotides Atu0215: Atu0215 - hypothetical protein, at 220,014 to 220,838 Atu0215 Atu0216: Atu0216 - components of type IV pilus, at 220,902 to 221,888 Atu0216 Atu0217: Atu0217 - components of type IV pilus, at 221,898 to 222,902 Atu0217 Position (kb) 220 221 222Strain fitness (log2 ratio) -2 -1 0 1 2at 219.914 kb on + strandat 219.974 kb on - strandat 220.058 kb on - strandat 220.063 kb on + strandat 220.208 kb on - strand, within Atu0215at 220.226 kb on + strand, within Atu0215at 220.233 kb on + strand, within Atu0215at 220.451 kb on + strand, within Atu0215at 220.459 kb on - strand, within Atu0215at 220.483 kb on + strand, within Atu0215at 220.483 kb on + strand, within Atu0215at 220.492 kb on + strand, within Atu0215at 220.567 kb on - strand, within Atu0215at 220.574 kb on + strand, within Atu0215at 220.574 kb on + strand, within Atu0215at 220.574 kb on + strand, within Atu0215at 220.576 kb on + strand, within Atu0215at 220.576 kb on + strand, within Atu0215at 220.582 kb on - strand, within Atu0215at 220.605 kb on + strand, within Atu0215at 220.605 kb on + strand, within Atu0215at 220.630 kb on + strand, within Atu0215at 220.684 kb on + strand, within Atu0215at 220.694 kb on - strand, within Atu0215at 220.694 kb on - strand, within Atu0215at 220.759 kb on - strandat 220.785 kb on + strandat 220.787 kb on + strandat 220.816 kb on - strandat 220.834 kb on + strandat 220.834 kb on + strandat 220.908 kb on - strandat 220.908 kb on - strandat 221.059 kb on + strand, within Atu0216at 221.059 kb on + strand, within Atu0216at 221.086 kb on + strand, within Atu0216at 221.101 kb on + strand, within Atu0216at 221.125 kb on - strand, within Atu0216at 221.181 kb on + strand, within Atu0216at 221.310 kb on - strand, within Atu0216at 221.312 kb on + strand, within Atu0216at 221.318 kb on + strand, within Atu0216at 221.335 kb on - strand, within Atu0216at 221.788 kb on + strand, within Atu0216at 221.826 kb on + strandat 221.999 kb on + strand, within Atu0217at 222.054 kb on - strand, within Atu0217at 222.108 kb on - strand, within Atu0217at 222.115 kb on - strand, within Atu0217at 222.149 kb on + strand, within Atu0217at 222.149 kb on + strand, within Atu0217at 222.245 kb on - strand, within Atu0217at 222.360 kb on + strand, within Atu0217at 222.398 kb on + strand, within Atu0217at 222.474 kb on - strand, within Atu0217at 222.485 kb on - strand, within Atu0217at 222.496 kb on + strand, within Atu0217at 222.504 kb on - strand, within Atu0217at 222.524 kb on + strand, within Atu0217at 222.532 kb on - strand, within Atu0217at 222.545 kb on + strand, within Atu0217at 222.595 kb on + strand, within Atu0217at 222.703 kb on + strand, within Atu0217at 222.745 kb on + strand, within Atu0217at 222.745 kb on + strand, within Atu0217at 222.784 kb on + strand, within Atu0217at 222.846 kb on - strandat 222.853 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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219,914 + +1.1
219,974 - +0.2
220,058 - -0.0
220,063 + -0.5
220,208 - Atu0215 0.24 +0.7
220,226 + Atu0215 0.26 -0.7
220,233 + Atu0215 0.27 -0.8
220,451 + Atu0215 0.53 +0.9
220,459 - Atu0215 0.54 +0.3
220,483 + Atu0215 0.57 -1.3
220,483 + Atu0215 0.57 +1.5
220,492 + Atu0215 0.58 +0.3
220,567 - Atu0215 0.67 -0.2
220,574 + Atu0215 0.68 -1.7
220,574 + Atu0215 0.68 +0.7
220,574 + Atu0215 0.68 -1.3
220,576 + Atu0215 0.68 +0.0
220,576 + Atu0215 0.68 -1.6
220,582 - Atu0215 0.69 -0.9
220,605 + Atu0215 0.72 +0.5
220,605 + Atu0215 0.72 +0.6
220,630 + Atu0215 0.75 -0.5
220,684 + Atu0215 0.81 +0.3
220,694 - Atu0215 0.82 -0.6
220,694 - Atu0215 0.82 -1.3
220,759 - +1.2
220,785 + -0.9
220,787 + +0.1
220,816 - -1.8
220,834 + +0.8
220,834 + -0.8
220,908 - -0.7
220,908 - -0.5
221,059 + Atu0216 0.16 -0.0
221,059 + Atu0216 0.16 +0.2
221,086 + Atu0216 0.19 -1.2
221,101 + Atu0216 0.20 +0.6
221,125 - Atu0216 0.23 -0.2
221,181 + Atu0216 0.28 +0.2
221,310 - Atu0216 0.41 -0.8
221,312 + Atu0216 0.42 +0.1
221,318 + Atu0216 0.42 +1.0
221,335 - Atu0216 0.44 -1.1
221,788 + Atu0216 0.90 +0.5
221,826 + -0.1
221,999 + Atu0217 0.10 -0.5
222,054 - Atu0217 0.16 -1.6
222,108 - Atu0217 0.21 +0.3
222,115 - Atu0217 0.22 +0.1
222,149 + Atu0217 0.25 +2.5
222,149 + Atu0217 0.25 -0.3
222,245 - Atu0217 0.35 -0.3
222,360 + Atu0217 0.46 +0.7
222,398 + Atu0217 0.50 -0.8
222,474 - Atu0217 0.57 +0.9
222,485 - Atu0217 0.58 -0.3
222,496 + Atu0217 0.60 +0.2
222,504 - Atu0217 0.60 -1.2
222,524 + Atu0217 0.62 -1.5
222,532 - Atu0217 0.63 -0.8
222,545 + Atu0217 0.64 -0.6
222,595 + Atu0217 0.69 -0.5
222,703 + Atu0217 0.80 -1.1
222,745 + Atu0217 0.84 -1.0
222,745 + Atu0217 0.84 -0.5
222,784 + Atu0217 0.88 -0.0
222,846 - -1.5
222,853 + +0.5

Or see this region's nucleotide sequence