Experiment: LB_Sorghum Btx 430
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0243 and Atu8117 are separated by 66 nucleotides Atu8117 and Atu0245 are separated by 96 nucleotides Atu0245 and Atu0246 are separated by 17 nucleotides Atu0246 and Atu0247 are separated by 14 nucleotides
Atu0243: Atu0243 - hypothetical protein, at 242,804 to 243,415
Atu0243
Atu8117: Atu8117 - hypothetical protein, at 243,482 to 243,883
Atu8117
Atu0245: Atu0245 - transcriptional regulator, at 243,980 to 244,561
Atu0245
Atu0246: Atu0246 - acetyltransferase, at 244,579 to 245,097
Atu0246
Atu0247: Atu0247 - hypothetical protein, at 245,112 to 246,185
Atu0247
Position (kb) 243
244
245 Strain fitness (log2 ratio) -2
-1
0
1 at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.135 kb on - strand, within Atu0243 at 243.142 kb on - strand, within Atu0243 at 243.159 kb on + strand, within Atu0243 at 243.159 kb on + strand, within Atu0243 at 243.167 kb on - strand, within Atu0243 at 243.167 kb on - strand, within Atu0243 at 243.169 kb on + strand, within Atu0243 at 243.310 kb on - strand, within Atu0243 at 243.344 kb on - strand, within Atu0243 at 243.345 kb on + strand, within Atu0243 at 243.345 kb on + strand, within Atu0243 at 243.425 kb on + strand at 243.433 kb on - strand at 243.433 kb on - strand at 243.518 kb on - strand at 243.534 kb on - strand, within Atu8117 at 243.580 kb on - strand, within Atu8117 at 243.713 kb on - strand, within Atu8117 at 243.815 kb on - strand, within Atu8117 at 243.848 kb on + strand at 244.020 kb on - strand at 244.156 kb on + strand, within Atu0245 at 244.166 kb on + strand, within Atu0245 at 244.169 kb on - strand, within Atu0245 at 244.174 kb on - strand, within Atu0245 at 244.239 kb on + strand, within Atu0245 at 244.246 kb on + strand, within Atu0245 at 244.258 kb on + strand, within Atu0245 at 244.439 kb on + strand, within Atu0245 at 244.442 kb on - strand, within Atu0245 at 244.445 kb on + strand, within Atu0245 at 244.553 kb on - strand at 244.573 kb on - strand at 244.714 kb on - strand, within Atu0246 at 244.759 kb on + strand, within Atu0246 at 244.784 kb on + strand, within Atu0246 at 244.791 kb on + strand, within Atu0246 at 244.799 kb on - strand, within Atu0246 at 244.799 kb on - strand, within Atu0246 at 244.891 kb on - strand, within Atu0246 at 244.905 kb on + strand, within Atu0246 at 244.931 kb on - strand, within Atu0246 at 244.931 kb on - strand, within Atu0246 at 244.946 kb on + strand, within Atu0246 at 244.959 kb on + strand, within Atu0246 at 244.994 kb on + strand, within Atu0246 at 245.031 kb on + strand, within Atu0246 at 245.109 kb on + strand at 245.109 kb on + strand at 245.109 kb on + strand at 245.117 kb on - strand at 245.268 kb on - strand, within Atu0247 at 245.311 kb on - strand, within Atu0247 at 245.425 kb on + strand, within Atu0247 at 245.426 kb on + strand, within Atu0247 at 245.434 kb on - strand, within Atu0247 at 245.459 kb on + strand, within Atu0247 at 245.487 kb on + strand, within Atu0247 at 245.493 kb on - strand, within Atu0247 at 245.500 kb on + strand, within Atu0247 at 245.539 kb on + strand, within Atu0247
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Sorghum Btx 430 remove 243,067 + Atu0243 0.43 -0.1 243,067 + Atu0243 0.43 +1.4 243,067 + Atu0243 0.43 -1.2 243,067 + Atu0243 0.43 +1.6 243,067 + Atu0243 0.43 -0.0 243,067 + Atu0243 0.43 -0.0 243,075 - Atu0243 0.44 -2.2 243,075 - Atu0243 0.44 -0.2 243,075 - Atu0243 0.44 +0.2 243,075 - Atu0243 0.44 +0.3 243,075 - Atu0243 0.44 +1.0 243,135 - Atu0243 0.54 -0.3 243,142 - Atu0243 0.55 -0.2 243,159 + Atu0243 0.58 -0.1 243,159 + Atu0243 0.58 -0.4 243,167 - Atu0243 0.59 +0.4 243,167 - Atu0243 0.59 -0.3 243,169 + Atu0243 0.60 -0.3 243,310 - Atu0243 0.83 +0.1 243,344 - Atu0243 0.88 -0.0 243,345 + Atu0243 0.88 -0.4 243,345 + Atu0243 0.88 -0.5 243,425 + -0.1 243,433 - -0.1 243,433 - +0.6 243,518 - -1.4 243,534 - Atu8117 0.13 -2.2 243,580 - Atu8117 0.24 -1.0 243,713 - Atu8117 0.57 +0.2 243,815 - Atu8117 0.83 -1.2 243,848 + +0.1 244,020 - -0.3 244,156 + Atu0245 0.30 -0.5 244,166 + Atu0245 0.32 -0.1 244,169 - Atu0245 0.32 -0.2 244,174 - Atu0245 0.33 +1.1 244,239 + Atu0245 0.45 -0.3 244,246 + Atu0245 0.46 +0.5 244,258 + Atu0245 0.48 -0.3 244,439 + Atu0245 0.79 +0.2 244,442 - Atu0245 0.79 -0.5 244,445 + Atu0245 0.80 +0.6 244,553 - +0.5 244,573 - +0.1 244,714 - Atu0246 0.26 +0.1 244,759 + Atu0246 0.35 -1.3 244,784 + Atu0246 0.39 +0.3 244,791 + Atu0246 0.41 -0.1 244,799 - Atu0246 0.42 -1.3 244,799 - Atu0246 0.42 -0.2 244,891 - Atu0246 0.60 +0.1 244,905 + Atu0246 0.63 +1.1 244,931 - Atu0246 0.68 +0.2 244,931 - Atu0246 0.68 +0.4 244,946 + Atu0246 0.71 -1.7 244,959 + Atu0246 0.73 +0.2 244,994 + Atu0246 0.80 +0.4 245,031 + Atu0246 0.87 -1.7 245,109 + +0.3 245,109 + +0.2 245,109 + +0.4 245,117 - -0.3 245,268 - Atu0247 0.15 +0.4 245,311 - Atu0247 0.19 -0.8 245,425 + Atu0247 0.29 -0.6 245,426 + Atu0247 0.29 +0.9 245,434 - Atu0247 0.30 -1.5 245,459 + Atu0247 0.32 +0.3 245,487 + Atu0247 0.35 -1.6 245,493 - Atu0247 0.35 +0.3 245,500 + Atu0247 0.36 +0.6 245,539 + Atu0247 0.40 +0.1
Or see this region's nucleotide sequence