Experiment: LB_Sorghum X54 243
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0248 and Atu0249 are separated by 3 nucleotides Atu0249 and Atu0250 are separated by 127 nucleotides Atu0250 and Atu0251 are separated by 206 nucleotides
Atu0248: Atu0248 - transcriptional regulator, AraC family, at 246,323 to 247,420
Atu0248
Atu0249: Atu0249 - ABC transporter, substrate binding protein (sugar), at 247,424 to 248,527
Atu0249
Atu0250: Atu0250 - hypothetical protein, at 248,655 to 249,062
Atu0250
Atu0251: Atu0251 - hypothetical protein, at 249,269 to 250,252
Atu0251
Position (kb) 247
248
249 Strain fitness (log2 ratio) -2
-1
0
1 at 246.438 kb on + strand, within Atu0248 at 246.445 kb on + strand, within Atu0248 at 246.482 kb on - strand, within Atu0248 at 246.512 kb on + strand, within Atu0248 at 246.576 kb on + strand, within Atu0248 at 246.576 kb on + strand, within Atu0248 at 246.584 kb on - strand, within Atu0248 at 246.589 kb on - strand, within Atu0248 at 246.597 kb on + strand, within Atu0248 at 246.619 kb on - strand, within Atu0248 at 246.665 kb on + strand, within Atu0248 at 246.793 kb on + strand, within Atu0248 at 246.877 kb on - strand, within Atu0248 at 246.916 kb on + strand, within Atu0248 at 246.927 kb on + strand, within Atu0248 at 247.029 kb on - strand, within Atu0248 at 247.068 kb on - strand, within Atu0248 at 247.120 kb on - strand, within Atu0248 at 247.247 kb on + strand, within Atu0248 at 247.346 kb on + strand at 247.388 kb on - strand at 247.493 kb on + strand at 247.615 kb on + strand, within Atu0249 at 247.630 kb on + strand, within Atu0249 at 247.662 kb on - strand, within Atu0249 at 247.671 kb on - strand, within Atu0249 at 247.721 kb on - strand, within Atu0249 at 247.742 kb on - strand, within Atu0249 at 247.797 kb on - strand, within Atu0249 at 247.808 kb on - strand, within Atu0249 at 247.907 kb on - strand, within Atu0249 at 247.989 kb on - strand, within Atu0249 at 248.012 kb on - strand, within Atu0249 at 248.137 kb on + strand, within Atu0249 at 248.194 kb on - strand, within Atu0249 at 248.201 kb on + strand, within Atu0249 at 248.242 kb on - strand, within Atu0249 at 248.363 kb on + strand, within Atu0249 at 248.371 kb on - strand, within Atu0249 at 248.405 kb on + strand, within Atu0249 at 248.607 kb on - strand at 248.653 kb on + strand at 248.661 kb on - strand at 248.898 kb on + strand, within Atu0250 at 248.916 kb on - strand, within Atu0250 at 248.916 kb on - strand, within Atu0250 at 248.916 kb on - strand, within Atu0250 at 248.918 kb on + strand, within Atu0250 at 248.936 kb on + strand, within Atu0250 at 248.965 kb on - strand, within Atu0250 at 248.982 kb on - strand, within Atu0250 at 249.051 kb on + strand at 249.058 kb on + strand at 249.353 kb on + strand at 249.389 kb on + strand, within Atu0251 at 249.408 kb on + strand, within Atu0251 at 249.462 kb on + strand, within Atu0251 at 249.522 kb on + strand, within Atu0251
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Sorghum X54 243 remove 246,438 + Atu0248 0.10 -0.4 246,445 + Atu0248 0.11 -0.4 246,482 - Atu0248 0.14 -0.7 246,512 + Atu0248 0.17 -0.0 246,576 + Atu0248 0.23 +0.2 246,576 + Atu0248 0.23 -0.2 246,584 - Atu0248 0.24 +0.2 246,589 - Atu0248 0.24 +0.9 246,597 + Atu0248 0.25 -2.1 246,619 - Atu0248 0.27 -0.1 246,665 + Atu0248 0.31 +0.2 246,793 + Atu0248 0.43 +0.4 246,877 - Atu0248 0.50 -0.6 246,916 + Atu0248 0.54 +0.0 246,927 + Atu0248 0.55 +0.5 247,029 - Atu0248 0.64 -0.0 247,068 - Atu0248 0.68 -0.0 247,120 - Atu0248 0.73 +0.4 247,247 + Atu0248 0.84 -0.1 247,346 + +0.2 247,388 - +0.3 247,493 + -0.3 247,615 + Atu0249 0.17 -0.2 247,630 + Atu0249 0.19 +0.7 247,662 - Atu0249 0.22 +0.1 247,671 - Atu0249 0.22 +0.2 247,721 - Atu0249 0.27 +0.2 247,742 - Atu0249 0.29 -0.3 247,797 - Atu0249 0.34 -0.2 247,808 - Atu0249 0.35 -0.6 247,907 - Atu0249 0.44 +0.1 247,989 - Atu0249 0.51 -0.1 248,012 - Atu0249 0.53 -0.0 248,137 + Atu0249 0.65 -0.2 248,194 - Atu0249 0.70 +0.8 248,201 + Atu0249 0.70 -0.4 248,242 - Atu0249 0.74 -1.1 248,363 + Atu0249 0.85 +0.4 248,371 - Atu0249 0.86 +0.0 248,405 + Atu0249 0.89 +0.9 248,607 - +0.4 248,653 + +0.1 248,661 - +0.4 248,898 + Atu0250 0.60 -0.2 248,916 - Atu0250 0.64 -0.1 248,916 - Atu0250 0.64 -1.0 248,916 - Atu0250 0.64 -2.0 248,918 + Atu0250 0.64 -0.0 248,936 + Atu0250 0.69 -0.2 248,965 - Atu0250 0.76 +0.1 248,982 - Atu0250 0.80 -0.6 249,051 + +0.3 249,058 + +0.1 249,353 + -2.2 249,389 + Atu0251 0.12 -0.1 249,408 + Atu0251 0.14 -1.5 249,462 + Atu0251 0.20 -0.6 249,522 + Atu0251 0.26 -1.3
Or see this region's nucleotide sequence