Experiment: LB_Sorghum F72 F505
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0977 and Atu0978 are separated by 272 nucleotides Atu0978 and Atu0979 are separated by 9 nucleotides
Atu0977: Atu0977 - serine protease DO-like protease, at 966,101 to 967,672
Atu0977
Atu0978: Atu0978 - two component response regulator, at 967,945 to 968,703
Atu0978
Atu0979: Atu0979 - two component sensor kinase, at 968,713 to 970,122
Atu0979
Position (kb) 967
968
969 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 967.183 kb on + strand, within Atu0977 at 967.265 kb on + strand, within Atu0977 at 967.511 kb on + strand, within Atu0977 at 967.580 kb on - strand at 967.582 kb on + strand at 967.582 kb on + strand at 967.752 kb on - strand at 967.828 kb on + strand at 967.896 kb on - strand at 967.924 kb on - strand at 967.991 kb on + strand at 968.051 kb on + strand, within Atu0978 at 968.059 kb on + strand, within Atu0978 at 968.060 kb on - strand, within Atu0978 at 968.101 kb on + strand, within Atu0978 at 968.144 kb on - strand, within Atu0978 at 968.187 kb on + strand, within Atu0978 at 968.191 kb on - strand, within Atu0978 at 968.234 kb on + strand, within Atu0978 at 968.242 kb on - strand, within Atu0978 at 968.275 kb on + strand, within Atu0978 at 968.347 kb on + strand, within Atu0978 at 968.384 kb on - strand, within Atu0978 at 968.397 kb on + strand, within Atu0978 at 968.405 kb on - strand, within Atu0978 at 968.594 kb on - strand, within Atu0978 at 968.663 kb on - strand at 968.729 kb on - strand at 968.729 kb on - strand at 968.773 kb on - strand at 968.831 kb on - strand at 968.994 kb on - strand, within Atu0979 at 969.132 kb on + strand, within Atu0979 at 969.140 kb on - strand, within Atu0979 at 969.144 kb on + strand, within Atu0979 at 969.236 kb on + strand, within Atu0979 at 969.241 kb on + strand, within Atu0979 at 969.267 kb on + strand, within Atu0979 at 969.390 kb on + strand, within Atu0979 at 969.465 kb on + strand, within Atu0979 at 969.466 kb on - strand, within Atu0979 at 969.490 kb on - strand, within Atu0979 at 969.587 kb on + strand, within Atu0979 at 969.590 kb on + strand, within Atu0979 at 969.600 kb on + strand, within Atu0979 at 969.623 kb on - strand, within Atu0979
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Sorghum F72 F505 remove 967,183 + Atu0977 0.69 +0.9 967,265 + Atu0977 0.74 +0.9 967,511 + Atu0977 0.90 -0.6 967,580 - +0.9 967,582 + -1.3 967,582 + -2.9 967,752 - +0.3 967,828 + -0.3 967,896 - -0.6 967,924 - -1.0 967,991 + +1.9 968,051 + Atu0978 0.14 +0.2 968,059 + Atu0978 0.15 -0.1 968,060 - Atu0978 0.15 -2.9 968,101 + Atu0978 0.21 -0.7 968,144 - Atu0978 0.26 +0.9 968,187 + Atu0978 0.32 -1.1 968,191 - Atu0978 0.32 -0.5 968,234 + Atu0978 0.38 -0.0 968,242 - Atu0978 0.39 +0.3 968,275 + Atu0978 0.43 -1.4 968,347 + Atu0978 0.53 -0.4 968,384 - Atu0978 0.58 -0.7 968,397 + Atu0978 0.60 -1.4 968,405 - Atu0978 0.61 -0.9 968,594 - Atu0978 0.86 -2.6 968,663 - -0.7 968,729 - -1.0 968,729 - -0.8 968,773 - -0.2 968,831 - +0.0 968,994 - Atu0979 0.20 -1.3 969,132 + Atu0979 0.30 -0.3 969,140 - Atu0979 0.30 -0.1 969,144 + Atu0979 0.31 +0.5 969,236 + Atu0979 0.37 +1.9 969,241 + Atu0979 0.37 +0.7 969,267 + Atu0979 0.39 -0.6 969,390 + Atu0979 0.48 +0.3 969,465 + Atu0979 0.53 +1.9 969,466 - Atu0979 0.53 -0.3 969,490 - Atu0979 0.55 -0.4 969,587 + Atu0979 0.62 +1.3 969,590 + Atu0979 0.62 -0.0 969,600 + Atu0979 0.63 -0.0 969,623 - Atu0979 0.65 +0.7
Or see this region's nucleotide sequence