Experiment: LB_Sorghum SS 20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5112 and Atu5113 are separated by 17 nucleotides Atu5113 and Atu5114 are separated by 57 nucleotides Atu5114 and Atu5115 are separated by 3 nucleotides Atu5115 and Atu5116 are separated by 41 nucleotides Atu5116 and Atu5117 are separated by 311 nucleotides
Atu5112: Atu5112 - hypothetical protein, at 121,018 to 122,340
Atu5112
Atu5113: Atu5113 - transcriptional regulator, at 122,358 to 122,636
Atu5113
Atu5114: Atu5114 - hypothetical protein, at 122,694 to 123,026
Atu5114
Atu5115: Atu5115 - hypothetical protein, at 123,030 to 123,296
Atu5115
Atu5116: Atu5116 - transcriptional regulator protein, at 123,338 to 123,649
Atu5116
Atu5117: Atu5117 - hypothetical protein, at 123,961 to 124,902
Atu5117
Position (kb) 123
124 Strain fitness (log2 ratio) -1
0
1 at 122.351 kb on + strand at 122.734 kb on + strand, within Atu5114 at 122.750 kb on - strand, within Atu5114 at 122.789 kb on - strand, within Atu5114 at 122.799 kb on - strand, within Atu5114 at 122.840 kb on + strand, within Atu5114 at 122.938 kb on - strand, within Atu5114 at 123.043 kb on - strand at 123.052 kb on - strand at 123.068 kb on - strand, within Atu5115 at 123.249 kb on - strand, within Atu5115 at 123.269 kb on + strand, within Atu5115 at 123.277 kb on - strand at 123.308 kb on - strand at 123.319 kb on + strand at 123.329 kb on - strand at 123.360 kb on + strand at 123.399 kb on + strand, within Atu5116 at 123.399 kb on + strand, within Atu5116 at 123.442 kb on + strand, within Atu5116 at 123.450 kb on - strand, within Atu5116 at 123.459 kb on + strand, within Atu5116 at 123.480 kb on - strand, within Atu5116 at 123.491 kb on - strand, within Atu5116 at 123.505 kb on + strand, within Atu5116 at 123.505 kb on - strand, within Atu5116 at 123.569 kb on + strand, within Atu5116 at 123.574 kb on + strand, within Atu5116 at 123.574 kb on + strand, within Atu5116 at 123.577 kb on - strand, within Atu5116 at 123.577 kb on - strand, within Atu5116 at 123.582 kb on - strand, within Atu5116 at 123.582 kb on - strand, within Atu5116 at 123.584 kb on + strand, within Atu5116 at 123.587 kb on - strand, within Atu5116 at 123.685 kb on + strand at 123.685 kb on + strand at 123.829 kb on + strand at 123.916 kb on - strand at 124.049 kb on + strand at 124.062 kb on - strand, within Atu5117 at 124.121 kb on - strand, within Atu5117 at 124.121 kb on - strand, within Atu5117 at 124.121 kb on - strand, within Atu5117 at 124.151 kb on + strand, within Atu5117 at 124.168 kb on + strand, within Atu5117 at 124.193 kb on + strand, within Atu5117 at 124.267 kb on - strand, within Atu5117 at 124.267 kb on - strand, within Atu5117 at 124.284 kb on - strand, within Atu5117 at 124.334 kb on + strand, within Atu5117 at 124.437 kb on - strand, within Atu5117 at 124.451 kb on + strand, within Atu5117 at 124.451 kb on + strand, within Atu5117 at 124.451 kb on + strand, within Atu5117 at 124.451 kb on + strand, within Atu5117 at 124.451 kb on + strand, within Atu5117 at 124.459 kb on - strand, within Atu5117 at 124.504 kb on - strand, within Atu5117 at 124.576 kb on + strand, within Atu5117 at 124.591 kb on + strand, within Atu5117 at 124.608 kb on + strand, within Atu5117
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Sorghum SS 20 remove 122,351 + +0.3 122,734 + Atu5114 0.12 -0.1 122,750 - Atu5114 0.17 +1.3 122,789 - Atu5114 0.29 +0.3 122,799 - Atu5114 0.32 +0.1 122,840 + Atu5114 0.44 -0.2 122,938 - Atu5114 0.73 -0.2 123,043 - -0.2 123,052 - -1.1 123,068 - Atu5115 0.14 +1.1 123,249 - Atu5115 0.82 -0.4 123,269 + Atu5115 0.90 +0.3 123,277 - -0.3 123,308 - +0.9 123,319 + -0.0 123,329 - +0.1 123,360 + +0.4 123,399 + Atu5116 0.20 +0.3 123,399 + Atu5116 0.20 +0.4 123,442 + Atu5116 0.33 +1.3 123,450 - Atu5116 0.36 +0.2 123,459 + Atu5116 0.39 +0.4 123,480 - Atu5116 0.46 +1.1 123,491 - Atu5116 0.49 -0.1 123,505 + Atu5116 0.54 +0.2 123,505 - Atu5116 0.54 +0.7 123,569 + Atu5116 0.74 +0.5 123,574 + Atu5116 0.76 +0.5 123,574 + Atu5116 0.76 +0.1 123,577 - Atu5116 0.77 +0.7 123,577 - Atu5116 0.77 +1.2 123,582 - Atu5116 0.78 +0.2 123,582 - Atu5116 0.78 -1.5 123,584 + Atu5116 0.79 -0.3 123,587 - Atu5116 0.80 +0.8 123,685 + -0.6 123,685 + +1.1 123,829 + +0.2 123,916 - +0.4 124,049 + -0.2 124,062 - Atu5117 0.11 -1.2 124,121 - Atu5117 0.17 +0.7 124,121 - Atu5117 0.17 +1.1 124,121 - Atu5117 0.17 -0.0 124,151 + Atu5117 0.20 +0.9 124,168 + Atu5117 0.22 -0.2 124,193 + Atu5117 0.25 +0.1 124,267 - Atu5117 0.32 +0.5 124,267 - Atu5117 0.32 -0.6 124,284 - Atu5117 0.34 +0.5 124,334 + Atu5117 0.40 +0.0 124,437 - Atu5117 0.51 +0.0 124,451 + Atu5117 0.52 +0.4 124,451 + Atu5117 0.52 +0.1 124,451 + Atu5117 0.52 +0.2 124,451 + Atu5117 0.52 -0.2 124,451 + Atu5117 0.52 -1.2 124,459 - Atu5117 0.53 +0.7 124,504 - Atu5117 0.58 -0.6 124,576 + Atu5117 0.65 -0.6 124,591 + Atu5117 0.67 +0.4 124,608 + Atu5117 0.69 -0.7
Or see this region's nucleotide sequence