Experiment: LB_Sorghum SS 20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3611 and Atu3612 overlap by 1 nucleotides Atu3612 and Atu3613 are separated by 84 nucleotides Atu3613 and Atu3614 are separated by 119 nucleotides
Atu3611: Atu3611 - cyclohexadienyl dehydrogenase, at 666,625 to 667,554
Atu3611
Atu3612: Atu3612 - histidinol-phosphate aminotransferase, at 667,554 to 668,660
Atu3612
Atu3613: Atu3613 - hypothetical protein, at 668,745 to 669,506
Atu3613
Atu3614: Atu3614 - glyoxalase II, at 669,626 to 670,396
Atu3614
Position (kb) 667
668
669 Strain fitness (log2 ratio) -2
-1
0
1
2 at 666.559 kb on - strand at 668.839 kb on + strand, within Atu3613 at 668.882 kb on + strand, within Atu3613 at 669.036 kb on - strand, within Atu3613 at 669.046 kb on - strand, within Atu3613 at 669.061 kb on + strand, within Atu3613 at 669.087 kb on + strand, within Atu3613 at 669.089 kb on + strand, within Atu3613 at 669.113 kb on - strand, within Atu3613 at 669.205 kb on + strand, within Atu3613 at 669.370 kb on + strand, within Atu3613 at 669.370 kb on + strand, within Atu3613 at 669.376 kb on - strand, within Atu3613 at 669.378 kb on - strand, within Atu3613 at 669.378 kb on - strand, within Atu3613
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Sorghum SS 20 remove 666,559 - +0.2 668,839 + Atu3613 0.12 +0.9 668,882 + Atu3613 0.18 -0.3 669,036 - Atu3613 0.38 -2.4 669,046 - Atu3613 0.40 -0.3 669,061 + Atu3613 0.41 -0.5 669,087 + Atu3613 0.45 -0.1 669,089 + Atu3613 0.45 -0.5 669,113 - Atu3613 0.48 -0.1 669,205 + Atu3613 0.60 -0.9 669,370 + Atu3613 0.82 +0.3 669,370 + Atu3613 0.82 -0.5 669,376 - Atu3613 0.83 +0.3 669,378 - Atu3613 0.83 +2.3 669,378 - Atu3613 0.83 -0.8
Or see this region's nucleotide sequence