Experiment: LB_Sorghum_root
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0693 and Atu0694 are separated by 93 nucleotides Atu0694 and Atu8086 are separated by 61 nucleotides Atu8086 and Atu0695 are separated by 214 nucleotides
Atu0693: Atu0693 - PmbA/TldD related protein, at 690,689 to 692,035
Atu0693
Atu0694: Atu0694 - inositol monophosphatase family protein, at 692,129 to 692,935
Atu0694
Atu8086: Atu8086 - hypothetical protein, at 692,997 to 693,236
Atu8086
Atu0695: Atu0695 - 3-deoxy-D-manno-octulosonic acid transferase-like protein, at 693,451 to 694,773
Atu0695
Position (kb) 692
693
694 Strain fitness (log2 ratio) -2
-1
0
1 at 692.231 kb on + strand, within Atu0694 at 692.237 kb on - strand, within Atu0694 at 692.278 kb on + strand, within Atu0694 at 692.330 kb on + strand, within Atu0694 at 692.330 kb on + strand, within Atu0694 at 692.333 kb on - strand, within Atu0694 at 692.445 kb on + strand, within Atu0694 at 692.457 kb on + strand, within Atu0694 at 692.479 kb on - strand, within Atu0694 at 692.557 kb on - strand, within Atu0694 at 692.557 kb on - strand, within Atu0694 at 692.588 kb on - strand, within Atu0694 at 692.650 kb on + strand, within Atu0694 at 692.650 kb on + strand, within Atu0694 at 692.727 kb on + strand, within Atu0694 at 692.737 kb on + strand, within Atu0694 at 692.745 kb on - strand, within Atu0694 at 692.828 kb on + strand, within Atu0694 at 692.836 kb on - strand, within Atu0694 at 692.957 kb on + strand at 693.220 kb on - strand at 693.407 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Sorghum_root remove 692,231 + Atu0694 0.13 -0.3 692,237 - Atu0694 0.13 -0.4 692,278 + Atu0694 0.18 +1.2 692,330 + Atu0694 0.25 +0.4 692,330 + Atu0694 0.25 +0.9 692,333 - Atu0694 0.25 -2.4 692,445 + Atu0694 0.39 -0.7 692,457 + Atu0694 0.41 -1.2 692,479 - Atu0694 0.43 +0.0 692,557 - Atu0694 0.53 +0.4 692,557 - Atu0694 0.53 -0.5 692,588 - Atu0694 0.57 -0.0 692,650 + Atu0694 0.65 +0.4 692,650 + Atu0694 0.65 +0.8 692,727 + Atu0694 0.74 +0.3 692,737 + Atu0694 0.75 +0.3 692,745 - Atu0694 0.76 +0.5 692,828 + Atu0694 0.87 +0.5 692,836 - Atu0694 0.88 +0.1 692,957 + -0.1 693,220 - -1.3 693,407 + +0.3
Or see this region's nucleotide sequence