Experiment: LB_Arabidopsis_root
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0692 and Atu0693 are separated by 116 nucleotides Atu0693 and Atu0694 are separated by 93 nucleotides Atu0694 and Atu8086 are separated by 61 nucleotides
Atu0692: Atu0692 - glutathione-regulated potassium-efflux system protein, at 688,740 to 690,572
Atu0692
Atu0693: Atu0693 - PmbA/TldD related protein, at 690,689 to 692,035
Atu0693
Atu0694: Atu0694 - inositol monophosphatase family protein, at 692,129 to 692,935
Atu0694
Atu8086: Atu8086 - hypothetical protein, at 692,997 to 693,236
Atu8086
Position (kb) 690
691
692
693 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 689.690 kb on - strand, within Atu0692 at 689.735 kb on - strand, within Atu0692 at 689.817 kb on + strand, within Atu0692 at 689.825 kb on - strand, within Atu0692 at 689.845 kb on + strand, within Atu0692 at 689.847 kb on - strand, within Atu0692 at 689.847 kb on - strand, within Atu0692 at 689.979 kb on - strand, within Atu0692 at 690.411 kb on + strand at 690.469 kb on - strand at 690.488 kb on - strand at 690.493 kb on - strand at 690.493 kb on - strand at 690.600 kb on - strand at 690.653 kb on - strand at 690.708 kb on + strand at 690.716 kb on + strand at 690.828 kb on - strand, within Atu0693 at 690.893 kb on - strand, within Atu0693 at 690.966 kb on - strand, within Atu0693 at 690.966 kb on - strand, within Atu0693 at 691.071 kb on - strand, within Atu0693 at 691.097 kb on - strand, within Atu0693 at 691.111 kb on + strand, within Atu0693 at 691.160 kb on + strand, within Atu0693 at 691.258 kb on - strand, within Atu0693 at 691.296 kb on - strand, within Atu0693 at 691.502 kb on + strand, within Atu0693 at 691.588 kb on + strand, within Atu0693 at 691.615 kb on + strand, within Atu0693 at 691.841 kb on + strand, within Atu0693 at 692.231 kb on + strand, within Atu0694 at 692.237 kb on - strand, within Atu0694 at 692.278 kb on + strand, within Atu0694 at 692.330 kb on + strand, within Atu0694 at 692.330 kb on + strand, within Atu0694 at 692.333 kb on - strand, within Atu0694 at 692.445 kb on + strand, within Atu0694 at 692.457 kb on + strand, within Atu0694 at 692.479 kb on - strand, within Atu0694 at 692.557 kb on - strand, within Atu0694 at 692.557 kb on - strand, within Atu0694 at 692.588 kb on - strand, within Atu0694 at 692.650 kb on + strand, within Atu0694 at 692.650 kb on + strand, within Atu0694 at 692.727 kb on + strand, within Atu0694 at 692.737 kb on + strand, within Atu0694 at 692.745 kb on - strand, within Atu0694 at 692.828 kb on + strand, within Atu0694 at 692.836 kb on - strand, within Atu0694 at 692.957 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Arabidopsis_root remove 689,690 - Atu0692 0.52 -1.3 689,735 - Atu0692 0.54 -1.8 689,817 + Atu0692 0.59 -2.0 689,825 - Atu0692 0.59 -1.4 689,845 + Atu0692 0.60 -2.8 689,847 - Atu0692 0.60 -2.2 689,847 - Atu0692 0.60 -1.6 689,979 - Atu0692 0.68 -2.1 690,411 + -1.7 690,469 - +0.6 690,488 - -2.8 690,493 - -2.3 690,493 - -3.2 690,600 - -0.2 690,653 - +0.2 690,708 + -0.1 690,716 + -0.0 690,828 - Atu0693 0.10 +0.4 690,893 - Atu0693 0.15 +1.0 690,966 - Atu0693 0.21 +0.6 690,966 - Atu0693 0.21 +0.2 691,071 - Atu0693 0.28 +0.6 691,097 - Atu0693 0.30 -0.5 691,111 + Atu0693 0.31 -0.2 691,160 + Atu0693 0.35 -0.4 691,258 - Atu0693 0.42 -1.3 691,296 - Atu0693 0.45 -0.0 691,502 + Atu0693 0.60 +1.2 691,588 + Atu0693 0.67 -1.7 691,615 + Atu0693 0.69 -0.1 691,841 + Atu0693 0.86 -0.3 692,231 + Atu0694 0.13 +0.1 692,237 - Atu0694 0.13 +0.2 692,278 + Atu0694 0.18 +0.4 692,330 + Atu0694 0.25 +0.2 692,330 + Atu0694 0.25 -0.4 692,333 - Atu0694 0.25 +0.6 692,445 + Atu0694 0.39 +0.5 692,457 + Atu0694 0.41 +0.6 692,479 - Atu0694 0.43 -0.8 692,557 - Atu0694 0.53 +0.3 692,557 - Atu0694 0.53 -0.3 692,588 - Atu0694 0.57 -0.0 692,650 + Atu0694 0.65 -0.2 692,650 + Atu0694 0.65 +0.3 692,727 + Atu0694 0.74 +0.0 692,737 + Atu0694 0.75 +0.3 692,745 - Atu0694 0.76 +0.0 692,828 + Atu0694 0.87 +0.3 692,836 - Atu0694 0.88 +0.1 692,957 + +0.3
Or see this region's nucleotide sequence