Experiment: LB_Benthi_root
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3591 and Atu8190 are separated by 17 nucleotides Atu8190 and Atu3593 are separated by 1 nucleotides Atu3593 and Atu3594 are separated by 32 nucleotides
Atu3591: Atu3591 - short chain dehydrogenase, at 647,058 to 647,891
Atu3591
Atu8190: Atu8190 - hypothetical protein, at 647,909 to 648,106
Atu8190
Atu3593: Atu3593 - hypothetical protein, at 648,108 to 648,686
Atu3593
Atu3594: Atu3594 - hypothetical protein, at 648,719 to 649,492
Atu3594
Position (kb) 647
648
649 Strain fitness (log2 ratio) -2
-1
0
1 at 646.943 kb on + strand at 646.943 kb on + strand at 646.951 kb on - strand at 646.956 kb on - strand at 647.040 kb on + strand at 647.147 kb on + strand, within Atu3591 at 647.203 kb on + strand, within Atu3591 at 647.295 kb on + strand, within Atu3591 at 647.397 kb on - strand, within Atu3591 at 647.434 kb on + strand, within Atu3591 at 647.443 kb on + strand, within Atu3591 at 647.471 kb on - strand, within Atu3591 at 647.495 kb on + strand, within Atu3591 at 647.553 kb on + strand, within Atu3591 at 647.553 kb on - strand, within Atu3591 at 647.553 kb on - strand, within Atu3591 at 647.566 kb on + strand, within Atu3591 at 647.590 kb on - strand, within Atu3591 at 647.630 kb on - strand, within Atu3591 at 647.639 kb on + strand, within Atu3591 at 647.647 kb on - strand, within Atu3591 at 647.748 kb on + strand, within Atu3591 at 647.767 kb on - strand, within Atu3591 at 647.769 kb on + strand, within Atu3591 at 647.772 kb on - strand, within Atu3591 at 647.795 kb on + strand, within Atu3591 at 647.803 kb on - strand, within Atu3591 at 647.831 kb on - strand at 647.869 kb on - strand at 647.869 kb on - strand at 647.902 kb on + strand at 647.904 kb on - strand at 647.927 kb on + strand at 647.930 kb on - strand, within Atu8190 at 647.935 kb on - strand, within Atu8190 at 647.935 kb on - strand, within Atu8190 at 647.943 kb on + strand, within Atu8190 at 647.978 kb on + strand, within Atu8190 at 647.988 kb on - strand, within Atu8190 at 648.105 kb on + strand at 648.214 kb on - strand, within Atu3593 at 648.254 kb on + strand, within Atu3593 at 648.262 kb on - strand, within Atu3593 at 648.335 kb on + strand, within Atu3593 at 648.384 kb on + strand, within Atu3593 at 648.451 kb on + strand, within Atu3593 at 648.489 kb on + strand, within Atu3593 at 648.537 kb on - strand, within Atu3593 at 648.543 kb on - strand, within Atu3593 at 648.687 kb on + strand at 648.690 kb on - strand at 648.704 kb on + strand at 648.712 kb on - strand at 648.728 kb on + strand at 648.800 kb on + strand, within Atu3594 at 648.808 kb on - strand, within Atu3594 at 648.813 kb on - strand, within Atu3594 at 648.839 kb on - strand, within Atu3594 at 648.844 kb on + strand, within Atu3594 at 648.844 kb on + strand, within Atu3594 at 648.846 kb on - strand, within Atu3594 at 648.852 kb on - strand, within Atu3594 at 648.878 kb on - strand, within Atu3594 at 648.911 kb on - strand, within Atu3594 at 648.944 kb on + strand, within Atu3594
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Benthi_root remove 646,943 + -0.2 646,943 + -0.4 646,951 - +0.3 646,956 - +0.4 647,040 + +0.1 647,147 + Atu3591 0.11 +0.4 647,203 + Atu3591 0.17 -1.2 647,295 + Atu3591 0.28 -0.2 647,397 - Atu3591 0.41 +1.0 647,434 + Atu3591 0.45 -0.4 647,443 + Atu3591 0.46 +0.0 647,471 - Atu3591 0.50 +1.4 647,495 + Atu3591 0.52 -0.4 647,553 + Atu3591 0.59 -1.3 647,553 - Atu3591 0.59 -0.8 647,553 - Atu3591 0.59 -0.6 647,566 + Atu3591 0.61 -0.4 647,590 - Atu3591 0.64 -0.3 647,630 - Atu3591 0.69 -0.1 647,639 + Atu3591 0.70 -0.4 647,647 - Atu3591 0.71 +0.4 647,748 + Atu3591 0.83 -0.3 647,767 - Atu3591 0.85 -0.2 647,769 + Atu3591 0.85 +0.2 647,772 - Atu3591 0.86 +0.5 647,795 + Atu3591 0.88 +0.1 647,803 - Atu3591 0.89 -0.1 647,831 - +1.3 647,869 - -2.1 647,869 - +1.2 647,902 + +0.1 647,904 - -0.1 647,927 + +1.6 647,930 - Atu8190 0.11 -0.1 647,935 - Atu8190 0.13 +0.5 647,935 - Atu8190 0.13 +0.6 647,943 + Atu8190 0.17 +0.4 647,978 + Atu8190 0.35 -0.0 647,988 - Atu8190 0.40 +0.5 648,105 + -1.2 648,214 - Atu3593 0.18 -0.1 648,254 + Atu3593 0.25 -0.7 648,262 - Atu3593 0.27 +0.0 648,335 + Atu3593 0.39 -0.1 648,384 + Atu3593 0.48 -1.0 648,451 + Atu3593 0.59 -0.8 648,489 + Atu3593 0.66 +0.1 648,537 - Atu3593 0.74 -0.8 648,543 - Atu3593 0.75 -0.0 648,687 + -0.9 648,690 - -0.1 648,704 + +0.3 648,712 - +0.3 648,728 + +1.0 648,800 + Atu3594 0.10 -0.9 648,808 - Atu3594 0.11 +1.4 648,813 - Atu3594 0.12 -0.6 648,839 - Atu3594 0.16 -1.7 648,844 + Atu3594 0.16 +0.2 648,844 + Atu3594 0.16 -2.1 648,846 - Atu3594 0.16 -0.6 648,852 - Atu3594 0.17 -0.6 648,878 - Atu3594 0.21 +0.3 648,911 - Atu3594 0.25 +0.5 648,944 + Atu3594 0.29 +0.7
Or see this region's nucleotide sequence