Experiment: LB_Benthi_root
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0772 and Atu0773 are separated by 10 nucleotides Atu0773 and Atu0774 are separated by 58 nucleotides Atu0774 and Atu0775 are separated by 92 nucleotides
Atu0772: Atu0772 - hypothetical protein, at 768,545 to 768,931
Atu0772
Atu0773: Atu0773 - surfeit 1, at 768,942 to 769,676
Atu0773
Atu0774: Atu0774 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 769,735 to 770,781
Atu0774
Atu0775: Atu0775 - homoserine kinase, at 770,874 to 771,842
Atu0775
Position (kb) 769
770
771 Strain fitness (log2 ratio) -2
-1
0
1 at 768.783 kb on + strand, within Atu0772 at 768.791 kb on + strand, within Atu0772 at 768.809 kb on + strand, within Atu0772 at 768.817 kb on - strand, within Atu0772 at 768.976 kb on + strand at 769.103 kb on + strand, within Atu0773 at 769.110 kb on + strand, within Atu0773 at 769.111 kb on - strand, within Atu0773 at 769.118 kb on - strand, within Atu0773 at 769.222 kb on - strand, within Atu0773 at 769.337 kb on - strand, within Atu0773 at 769.337 kb on - strand, within Atu0773 at 769.337 kb on - strand, within Atu0773 at 769.359 kb on + strand, within Atu0773 at 769.465 kb on + strand, within Atu0773 at 769.549 kb on + strand, within Atu0773 at 769.552 kb on - strand, within Atu0773 at 769.689 kb on + strand at 769.707 kb on + strand at 769.707 kb on + strand at 769.707 kb on + strand at 770.696 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Benthi_root remove 768,783 + Atu0772 0.61 +0.0 768,791 + Atu0772 0.64 +0.5 768,809 + Atu0772 0.68 +0.6 768,817 - Atu0772 0.70 +0.8 768,976 + -0.2 769,103 + Atu0773 0.22 -2.4 769,110 + Atu0773 0.23 +0.4 769,111 - Atu0773 0.23 -0.9 769,118 - Atu0773 0.24 -0.5 769,222 - Atu0773 0.38 +0.3 769,337 - Atu0773 0.54 -0.5 769,337 - Atu0773 0.54 +1.0 769,337 - Atu0773 0.54 -0.0 769,359 + Atu0773 0.57 +1.3 769,465 + Atu0773 0.71 +0.3 769,549 + Atu0773 0.83 -0.2 769,552 - Atu0773 0.83 -0.1 769,689 + +0.3 769,707 + +0.1 769,707 + -0.5 769,707 + +0.4 770,696 + -0.2
Or see this region's nucleotide sequence