Strain Fitness in Pseudomonas putida KT2440 around PP_4299

Experiment: Growth at pH8 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4297 and PP_4298 are separated by 54 nucleotidesPP_4298 and PP_4299 are separated by 152 nucleotidesPP_4299 and PP_4300 are separated by 238 nucleotides PP_4297: PP_4297 - glyoxylate carboligase, at 4,886,942 to 4,888,717 _4297 PP_4298: PP_4298 - hydroxypyruvate isomerase, at 4,888,772 to 4,889,554 _4298 PP_4299: PP_4299 - tartronate semialdehyde reductase, at 4,889,707 to 4,890,600 _4299 PP_4300: PP_4300 - putative hydroxypyruvate reductase, at 4,890,839 to 4,892,113 _4300 Position (kb) 4889 4890 4891Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4888.883 kb on + strand, within PP_4298at 4889.049 kb on - strand, within PP_4298at 4889.049 kb on - strand, within PP_4298at 4889.068 kb on + strand, within PP_4298at 4889.069 kb on - strand, within PP_4298at 4889.128 kb on + strand, within PP_4298at 4889.129 kb on - strand, within PP_4298at 4889.129 kb on - strand, within PP_4298at 4889.231 kb on + strand, within PP_4298at 4889.232 kb on - strand, within PP_4298at 4889.232 kb on - strand, within PP_4298at 4889.232 kb on - strand, within PP_4298at 4889.300 kb on + strand, within PP_4298at 4889.300 kb on + strand, within PP_4298at 4889.301 kb on - strand, within PP_4298at 4889.301 kb on - strand, within PP_4298at 4889.301 kb on - strand, within PP_4298at 4889.309 kb on + strand, within PP_4298at 4889.309 kb on + strand, within PP_4298at 4889.309 kb on + strand, within PP_4298at 4889.309 kb on + strand, within PP_4298at 4889.309 kb on + strand, within PP_4298at 4889.310 kb on - strand, within PP_4298at 4889.432 kb on + strand, within PP_4298at 4889.433 kb on - strand, within PP_4298at 4889.433 kb on - strand, within PP_4298at 4889.433 kb on - strand, within PP_4298at 4889.433 kb on - strand, within PP_4298at 4889.433 kb on - strand, within PP_4298at 4889.680 kb on - strandat 4889.688 kb on + strandat 4889.689 kb on - strandat 4889.689 kb on - strandat 4889.689 kb on - strandat 4889.712 kb on + strandat 4890.053 kb on - strand, within PP_4299at 4890.598 kb on + strandat 4890.599 kb on - strandat 4890.599 kb on - strandat 4890.681 kb on + strandat 4890.681 kb on + strandat 4890.681 kb on + strandat 4890.681 kb on + strandat 4890.681 kb on + strandat 4890.681 kb on + strandat 4890.681 kb on + strandat 4890.682 kb on - strandat 4890.682 kb on - strandat 4890.823 kb on + strandat 4890.823 kb on + strandat 4890.824 kb on - strandat 4890.824 kb on - strandat 4890.824 kb on - strandat 4890.824 kb on - strandat 4890.824 kb on - strandat 4890.924 kb on - strandat 4891.373 kb on + strand, within PP_4300at 4891.374 kb on - strand, within PP_4300at 4891.374 kb on - strand, within PP_4300at 4891.374 kb on - strand, within PP_4300at 4891.374 kb on - strand, within PP_4300at 4891.379 kb on + strand, within PP_4300at 4891.379 kb on + strand, within PP_4300at 4891.379 kb on + strand, within PP_4300at 4891.379 kb on + strand, within PP_4300at 4891.379 kb on + strand, within PP_4300at 4891.379 kb on + strand, within PP_4300at 4891.379 kb on + strand, within PP_4300at 4891.379 kb on + strandat 4891.379 kb on + strand, within PP_4300at 4891.379 kb on + strand, within PP_4300at 4891.380 kb on - strand, within PP_4300at 4891.380 kb on - strand, within PP_4300at 4891.396 kb on - strand, within PP_4300at 4891.417 kb on - strand, within PP_4300

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose
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4,888,883 + PP_4298 0.14 +1.0
4,889,049 - PP_4298 0.35 +0.7
4,889,049 - PP_4298 0.35 +0.0
4,889,068 + PP_4298 0.38 -1.0
4,889,069 - PP_4298 0.38 -0.8
4,889,128 + PP_4298 0.45 +0.6
4,889,129 - PP_4298 0.46 +0.8
4,889,129 - PP_4298 0.46 -3.5
4,889,231 + PP_4298 0.59 +0.5
4,889,232 - PP_4298 0.59 -0.7
4,889,232 - PP_4298 0.59 +1.2
4,889,232 - PP_4298 0.59 -0.9
4,889,300 + PP_4298 0.67 -1.5
4,889,300 + PP_4298 0.67 -2.8
4,889,301 - PP_4298 0.68 -0.8
4,889,301 - PP_4298 0.68 +0.6
4,889,301 - PP_4298 0.68 +1.4
4,889,309 + PP_4298 0.69 -3.5
4,889,309 + PP_4298 0.69 +0.1
4,889,309 + PP_4298 0.69 -1.8
4,889,309 + PP_4298 0.69 +0.2
4,889,309 + PP_4298 0.69 -2.5
4,889,310 - PP_4298 0.69 +0.7
4,889,432 + PP_4298 0.84 +0.2
4,889,433 - PP_4298 0.84 -4.3
4,889,433 - PP_4298 0.84 +0.7
4,889,433 - PP_4298 0.84 -0.5
4,889,433 - PP_4298 0.84 -3.2
4,889,433 - PP_4298 0.84 -0.4
4,889,680 - -1.4
4,889,688 + -1.6
4,889,689 - +0.2
4,889,689 - +0.3
4,889,689 - -0.4
4,889,712 + +0.9
4,890,053 - PP_4299 0.39 +0.0
4,890,598 + +0.7
4,890,599 - -2.4
4,890,599 - +0.9
4,890,681 + -0.5
4,890,681 + +0.9
4,890,681 + +2.5
4,890,681 + +0.2
4,890,681 + +0.5
4,890,681 + -3.5
4,890,681 + -2.5
4,890,682 - +0.9
4,890,682 - +0.7
4,890,823 + +0.8
4,890,823 + -1.9
4,890,824 - -0.2
4,890,824 - -1.1
4,890,824 - +0.4
4,890,824 - -1.4
4,890,824 - +0.5
4,890,924 - +0.9
4,891,373 + PP_4300 0.42 +0.2
4,891,374 - PP_4300 0.42 +0.5
4,891,374 - PP_4300 0.42 -1.4
4,891,374 - PP_4300 0.42 -0.3
4,891,374 - PP_4300 0.42 +1.8
4,891,379 + PP_4300 0.42 +1.0
4,891,379 + PP_4300 0.42 +0.8
4,891,379 + PP_4300 0.42 +0.6
4,891,379 + PP_4300 0.42 +0.8
4,891,379 + PP_4300 0.42 -0.7
4,891,379 + PP_4300 0.42 -0.5
4,891,379 + PP_4300 0.42 +0.5
4,891,379 + -0.7
4,891,379 + PP_4300 0.42 -0.1
4,891,379 + PP_4300 0.42 -3.6
4,891,380 - PP_4300 0.42 -0.6
4,891,380 - PP_4300 0.42 -2.5
4,891,396 - PP_4300 0.44 -2.1
4,891,417 - PP_4300 0.45 -2.5

Or see this region's nucleotide sequence