Strain Fitness in Pseudomonas putida KT2440 around PP_4047

Experiment: Growth at pH8 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4046 and PP_4047 are separated by 15 nucleotidesPP_4047 and PP_4048 are separated by 9 nucleotides PP_4046: PP_4046 - conserved protein of unknown function, at 4,558,201 to 4,559,163 _4046 PP_4047: PP_4047 - conserved protein of unknown function, at 4,559,179 to 4,560,135 _4047 PP_4048: PP_4048 - conserved protein of unknown function, at 4,560,145 to 4,561,548 _4048 Position (kb) 4559 4560 4561Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4558.307 kb on + strand, within PP_4046at 4558.307 kb on + strand, within PP_4046at 4558.307 kb on + strand, within PP_4046at 4558.308 kb on - strand, within PP_4046at 4558.308 kb on - strand, within PP_4046at 4558.480 kb on + strand, within PP_4046at 4558.480 kb on + strand, within PP_4046at 4558.480 kb on + strand, within PP_4046at 4558.489 kb on + strand, within PP_4046at 4558.559 kb on + strand, within PP_4046at 4558.580 kb on + strand, within PP_4046at 4558.580 kb on + strand, within PP_4046at 4558.580 kb on + strand, within PP_4046at 4558.581 kb on - strand, within PP_4046at 4558.581 kb on - strand, within PP_4046at 4558.596 kb on - strand, within PP_4046at 4558.658 kb on + strand, within PP_4046at 4558.658 kb on + strand, within PP_4046at 4558.659 kb on - strand, within PP_4046at 4558.691 kb on + strand, within PP_4046at 4558.692 kb on - strand, within PP_4046at 4558.919 kb on + strand, within PP_4046at 4558.928 kb on + strand, within PP_4046at 4558.928 kb on + strand, within PP_4046at 4558.929 kb on - strand, within PP_4046at 4558.929 kb on - strand, within PP_4046at 4558.965 kb on - strand, within PP_4046at 4559.010 kb on + strand, within PP_4046at 4559.011 kb on - strand, within PP_4046at 4559.064 kb on + strand, within PP_4046at 4559.064 kb on + strand, within PP_4046at 4559.065 kb on - strand, within PP_4046at 4559.111 kb on + strandat 4559.112 kb on - strandat 4559.163 kb on + strandat 4559.164 kb on - strandat 4559.180 kb on + strandat 4559.181 kb on - strandat 4559.181 kb on - strandat 4559.181 kb on - strandat 4559.181 kb on - strandat 4559.182 kb on + strandat 4559.182 kb on + strandat 4559.183 kb on - strandat 4559.183 kb on - strandat 4559.183 kb on - strandat 4559.236 kb on + strandat 4559.263 kb on + strandat 4559.264 kb on - strandat 4559.281 kb on + strand, within PP_4047at 4559.281 kb on + strand, within PP_4047at 4559.282 kb on - strand, within PP_4047at 4559.337 kb on - strand, within PP_4047at 4559.415 kb on - strand, within PP_4047at 4559.432 kb on + strand, within PP_4047at 4559.433 kb on - strandat 4559.537 kb on + strand, within PP_4047at 4559.577 kb on + strand, within PP_4047at 4559.577 kb on + strand, within PP_4047at 4559.577 kb on + strand, within PP_4047at 4559.578 kb on - strand, within PP_4047at 4559.794 kb on + strand, within PP_4047at 4559.795 kb on - strand, within PP_4047at 4559.896 kb on + strand, within PP_4047at 4559.925 kb on + strandat 4559.926 kb on - strand, within PP_4047at 4559.926 kb on - strand, within PP_4047at 4559.998 kb on + strand, within PP_4047at 4559.999 kb on - strandat 4560.155 kb on - strandat 4560.242 kb on + strandat 4560.287 kb on - strand, within PP_4048at 4560.297 kb on + strand, within PP_4048at 4560.298 kb on - strand, within PP_4048at 4560.345 kb on + strand, within PP_4048at 4560.415 kb on - strand, within PP_4048at 4560.441 kb on + strand, within PP_4048at 4560.441 kb on + strand, within PP_4048at 4560.446 kb on + strand, within PP_4048at 4560.447 kb on - strand, within PP_4048at 4560.542 kb on + strand, within PP_4048at 4560.542 kb on + strand, within PP_4048at 4560.542 kb on + strand, within PP_4048at 4560.542 kb on + strand, within PP_4048at 4560.543 kb on - strand, within PP_4048at 4560.543 kb on - strand, within PP_4048at 4560.543 kb on - strand, within PP_4048at 4560.543 kb on - strand, within PP_4048at 4560.543 kb on - strand, within PP_4048at 4560.543 kb on - strand, within PP_4048at 4560.543 kb on - strand, within PP_4048at 4560.566 kb on + strand, within PP_4048at 4560.566 kb on + strand, within PP_4048at 4560.566 kb on + strand, within PP_4048at 4560.567 kb on - strand, within PP_4048at 4560.567 kb on - strand, within PP_4048at 4560.571 kb on - strand, within PP_4048at 4560.884 kb on + strand, within PP_4048at 4560.885 kb on - strand, within PP_4048at 4560.960 kb on - strand, within PP_4048at 4561.014 kb on - strand, within PP_4048at 4561.034 kb on + strand, within PP_4048at 4561.034 kb on + strand, within PP_4048

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose
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4,558,307 + PP_4046 0.11 -0.9
4,558,307 + PP_4046 0.11 +1.3
4,558,307 + PP_4046 0.11 +1.6
4,558,308 - PP_4046 0.11 +1.0
4,558,308 - PP_4046 0.11 -0.0
4,558,480 + PP_4046 0.29 +0.9
4,558,480 + PP_4046 0.29 -3.7
4,558,480 + PP_4046 0.29 -3.2
4,558,489 + PP_4046 0.30 +1.5
4,558,559 + PP_4046 0.37 +1.8
4,558,580 + PP_4046 0.39 -0.5
4,558,580 + PP_4046 0.39 -0.5
4,558,580 + PP_4046 0.39 -0.3
4,558,581 - PP_4046 0.39 -3.5
4,558,581 - PP_4046 0.39 +1.7
4,558,596 - PP_4046 0.41 +0.4
4,558,658 + PP_4046 0.47 +0.6
4,558,658 + PP_4046 0.47 +0.8
4,558,659 - PP_4046 0.48 +1.2
4,558,691 + PP_4046 0.51 +0.4
4,558,692 - PP_4046 0.51 +0.5
4,558,919 + PP_4046 0.75 +0.9
4,558,928 + PP_4046 0.75 -1.9
4,558,928 + PP_4046 0.75 -2.2
4,558,929 - PP_4046 0.76 +2.0
4,558,929 - PP_4046 0.76 +1.1
4,558,965 - PP_4046 0.79 +2.2
4,559,010 + PP_4046 0.84 -0.3
4,559,011 - PP_4046 0.84 -4.7
4,559,064 + PP_4046 0.90 +0.1
4,559,064 + PP_4046 0.90 +1.0
4,559,065 - PP_4046 0.90 +0.1
4,559,111 + +1.8
4,559,112 - +0.9
4,559,163 + +0.8
4,559,164 - +1.2
4,559,180 + +0.7
4,559,181 - -0.4
4,559,181 - -0.8
4,559,181 - +1.5
4,559,181 - -0.4
4,559,182 + +1.2
4,559,182 + -1.3
4,559,183 - +0.8
4,559,183 - -0.2
4,559,183 - -1.1
4,559,236 + -2.9
4,559,263 + +0.2
4,559,264 - -3.4
4,559,281 + PP_4047 0.11 -3.3
4,559,281 + PP_4047 0.11 -2.9
4,559,282 - PP_4047 0.11 -3.5
4,559,337 - PP_4047 0.17 -0.3
4,559,415 - PP_4047 0.25 -0.1
4,559,432 + PP_4047 0.26 -3.3
4,559,433 - +0.2
4,559,537 + PP_4047 0.37 -0.5
4,559,577 + PP_4047 0.42 +0.7
4,559,577 + PP_4047 0.42 +1.2
4,559,577 + PP_4047 0.42 -0.6
4,559,578 - PP_4047 0.42 +1.6
4,559,794 + PP_4047 0.64 -1.1
4,559,795 - PP_4047 0.64 -3.4
4,559,896 + PP_4047 0.75 -0.6
4,559,925 + +2.8
4,559,926 - PP_4047 0.78 -0.3
4,559,926 - PP_4047 0.78 -0.7
4,559,998 + PP_4047 0.86 -0.1
4,559,999 - -0.2
4,560,155 - -0.9
4,560,242 + +0.2
4,560,287 - PP_4048 0.10 -1.9
4,560,297 + PP_4048 0.11 +0.7
4,560,298 - PP_4048 0.11 +0.9
4,560,345 + PP_4048 0.14 +0.8
4,560,415 - PP_4048 0.19 -0.0
4,560,441 + PP_4048 0.21 -0.6
4,560,441 + PP_4048 0.21 -1.3
4,560,446 + PP_4048 0.21 -1.5
4,560,447 - PP_4048 0.22 +0.1
4,560,542 + PP_4048 0.28 +2.1
4,560,542 + PP_4048 0.28 -1.2
4,560,542 + PP_4048 0.28 +1.9
4,560,542 + PP_4048 0.28 -3.6
4,560,543 - PP_4048 0.28 +0.7
4,560,543 - PP_4048 0.28 -0.6
4,560,543 - PP_4048 0.28 -3.1
4,560,543 - PP_4048 0.28 -2.7
4,560,543 - PP_4048 0.28 -0.5
4,560,543 - PP_4048 0.28 -2.0
4,560,543 - PP_4048 0.28 -2.3
4,560,566 + PP_4048 0.30 -1.2
4,560,566 + PP_4048 0.30 -0.8
4,560,566 + PP_4048 0.30 -1.1
4,560,567 - PP_4048 0.30 +0.8
4,560,567 - PP_4048 0.30 -3.1
4,560,571 - PP_4048 0.30 +0.8
4,560,884 + PP_4048 0.53 +1.1
4,560,885 - PP_4048 0.53 +1.6
4,560,960 - PP_4048 0.58 +1.2
4,561,014 - PP_4048 0.62 +2.7
4,561,034 + PP_4048 0.63 -3.9
4,561,034 + PP_4048 0.63 -2.6

Or see this region's nucleotide sequence