Strain Fitness in Pseudomonas putida KT2440 around PP_4043

Experiment: Growth at pH8 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4042 and PP_4043 overlap by 4 nucleotidesPP_4043 and PP_4044 are separated by 166 nucleotidesPP_4044 and PP_4045 are separated by 42 nucleotidesPP_4045 and PP_4046 are separated by 45 nucleotides PP_4042: PP_4042 - glucose-6-phosphate 1-dehydrogenase, at 4,554,991 to 4,556,496 _4042 PP_4043: PP_4043 - putative 6-phosphogluconate dehydrogenase, decarboxylating, at 4,556,493 to 4,557,476 _4043 PP_4044: PP_4044 - conserved protein of unknown function, at 4,557,643 to 4,557,846 _4044 PP_4045: PP_4045 - conserved protein of unknown function, at 4,557,889 to 4,558,155 _4045 PP_4046: PP_4046 - conserved protein of unknown function, at 4,558,201 to 4,559,163 _4046 Position (kb) 4556 4557 4558Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4555.511 kb on + strand, within PP_4042at 4555.512 kb on - strand, within PP_4042at 4555.512 kb on - strand, within PP_4042at 4555.512 kb on - strand, within PP_4042at 4555.512 kb on - strand, within PP_4042at 4555.512 kb on - strand, within PP_4042at 4555.512 kb on - strand, within PP_4042at 4555.595 kb on + strand, within PP_4042at 4555.606 kb on + strand, within PP_4042at 4555.781 kb on + strand, within PP_4042at 4555.781 kb on + strand, within PP_4042at 4555.781 kb on + strand, within PP_4042at 4555.781 kb on + strand, within PP_4042at 4555.782 kb on - strand, within PP_4042at 4555.782 kb on - strand, within PP_4042at 4555.844 kb on + strand, within PP_4042at 4555.844 kb on + strand, within PP_4042at 4555.844 kb on + strand, within PP_4042at 4555.844 kb on + strand, within PP_4042at 4555.844 kb on + strand, within PP_4042at 4555.844 kb on + strand, within PP_4042at 4555.844 kb on + strand, within PP_4042at 4555.845 kb on - strand, within PP_4042at 4555.899 kb on + strand, within PP_4042at 4555.899 kb on + strand, within PP_4042at 4555.900 kb on - strand, within PP_4042at 4555.900 kb on - strand, within PP_4042at 4555.900 kb on - strand, within PP_4042at 4555.926 kb on - strand, within PP_4042at 4555.926 kb on - strand, within PP_4042at 4555.940 kb on + strand, within PP_4042at 4556.177 kb on + strand, within PP_4042at 4556.177 kb on + strand, within PP_4042at 4556.211 kb on - strandat 4556.239 kb on + strand, within PP_4042at 4556.239 kb on + strand, within PP_4042at 4556.239 kb on + strand, within PP_4042at 4556.240 kb on - strand, within PP_4042at 4556.240 kb on - strand, within PP_4042at 4556.240 kb on - strand, within PP_4042at 4556.340 kb on + strand, within PP_4042at 4556.340 kb on + strand, within PP_4042at 4556.400 kb on - strandat 4556.400 kb on - strandat 4556.400 kb on - strandat 4556.461 kb on - strandat 4556.560 kb on + strandat 4556.560 kb on + strandat 4556.560 kb on + strandat 4556.560 kb on + strandat 4556.561 kb on - strandat 4556.561 kb on - strandat 4556.561 kb on - strandat 4556.733 kb on - strand, within PP_4043at 4556.870 kb on - strand, within PP_4043at 4556.870 kb on - strand, within PP_4043at 4556.917 kb on + strand, within PP_4043at 4556.918 kb on - strand, within PP_4043at 4556.950 kb on + strand, within PP_4043at 4556.950 kb on + strand, within PP_4043at 4556.950 kb on + strandat 4556.951 kb on - strand, within PP_4043at 4556.951 kb on - strand, within PP_4043at 4557.133 kb on + strand, within PP_4043at 4557.133 kb on + strand, within PP_4043at 4557.134 kb on - strand, within PP_4043at 4557.184 kb on + strand, within PP_4043at 4557.184 kb on + strand, within PP_4043at 4557.184 kb on + strand, within PP_4043at 4557.185 kb on - strand, within PP_4043at 4557.316 kb on - strand, within PP_4043at 4557.447 kb on - strandat 4557.637 kb on + strandat 4557.684 kb on + strand, within PP_4044at 4557.684 kb on + strand, within PP_4044at 4557.684 kb on + strand, within PP_4044at 4557.685 kb on - strand, within PP_4044at 4557.718 kb on + strand, within PP_4044at 4557.718 kb on + strand, within PP_4044at 4557.718 kb on + strand, within PP_4044at 4557.718 kb on + strand, within PP_4044at 4557.718 kb on + strand, within PP_4044at 4557.719 kb on - strand, within PP_4044at 4557.719 kb on - strand, within PP_4044at 4557.719 kb on - strand, within PP_4044at 4557.719 kb on - strand, within PP_4044at 4557.719 kb on - strand, within PP_4044at 4557.753 kb on + strand, within PP_4044at 4557.754 kb on - strand, within PP_4044at 4557.952 kb on + strand, within PP_4045at 4557.957 kb on + strand, within PP_4045at 4557.958 kb on - strand, within PP_4045at 4558.168 kb on + strandat 4558.168 kb on + strandat 4558.169 kb on - strandat 4558.307 kb on + strand, within PP_4046at 4558.307 kb on + strand, within PP_4046at 4558.307 kb on + strand, within PP_4046at 4558.308 kb on - strand, within PP_4046at 4558.308 kb on - strand, within PP_4046

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose
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4,555,511 + PP_4042 0.35 -0.1
4,555,512 - PP_4042 0.35 -0.3
4,555,512 - PP_4042 0.35 -2.9
4,555,512 - PP_4042 0.35 +0.6
4,555,512 - PP_4042 0.35 +0.8
4,555,512 - PP_4042 0.35 +0.9
4,555,512 - PP_4042 0.35 -0.4
4,555,595 + PP_4042 0.40 +2.1
4,555,606 + PP_4042 0.41 +0.9
4,555,781 + PP_4042 0.52 -0.6
4,555,781 + PP_4042 0.52 +1.0
4,555,781 + PP_4042 0.52 -1.0
4,555,781 + PP_4042 0.52 +1.1
4,555,782 - PP_4042 0.53 -1.5
4,555,782 - PP_4042 0.53 -1.0
4,555,844 + PP_4042 0.57 -1.8
4,555,844 + PP_4042 0.57 -2.3
4,555,844 + PP_4042 0.57 -4.0
4,555,844 + PP_4042 0.57 -0.4
4,555,844 + PP_4042 0.57 +2.3
4,555,844 + PP_4042 0.57 +1.2
4,555,844 + PP_4042 0.57 -0.2
4,555,845 - PP_4042 0.57 +0.4
4,555,899 + PP_4042 0.60 +0.4
4,555,899 + PP_4042 0.60 -1.6
4,555,900 - PP_4042 0.60 +1.3
4,555,900 - PP_4042 0.60 +0.6
4,555,900 - PP_4042 0.60 -0.4
4,555,926 - PP_4042 0.62 -4.1
4,555,926 - PP_4042 0.62 +0.7
4,555,940 + PP_4042 0.63 -0.4
4,556,177 + PP_4042 0.79 +1.8
4,556,177 + PP_4042 0.79 -1.3
4,556,211 - +1.3
4,556,239 + PP_4042 0.83 +0.1
4,556,239 + PP_4042 0.83 -0.2
4,556,239 + PP_4042 0.83 -0.4
4,556,240 - PP_4042 0.83 +1.4
4,556,240 - PP_4042 0.83 +0.9
4,556,240 - PP_4042 0.83 +1.5
4,556,340 + PP_4042 0.90 +1.9
4,556,340 + PP_4042 0.90 +0.2
4,556,400 - +1.0
4,556,400 - -2.9
4,556,400 - +0.3
4,556,461 - -2.2
4,556,560 + +1.1
4,556,560 + +0.1
4,556,560 + +1.0
4,556,560 + +1.2
4,556,561 - +0.5
4,556,561 - -1.9
4,556,561 - +1.7
4,556,733 - PP_4043 0.24 +0.4
4,556,870 - PP_4043 0.38 -0.3
4,556,870 - PP_4043 0.38 +0.9
4,556,917 + PP_4043 0.43 -3.4
4,556,918 - PP_4043 0.43 -1.5
4,556,950 + PP_4043 0.46 -1.3
4,556,950 + PP_4043 0.46 +0.3
4,556,950 + +1.8
4,556,951 - PP_4043 0.47 +1.2
4,556,951 - PP_4043 0.47 -1.1
4,557,133 + PP_4043 0.65 +2.2
4,557,133 + PP_4043 0.65 +1.3
4,557,134 - PP_4043 0.65 +0.1
4,557,184 + PP_4043 0.70 +1.2
4,557,184 + PP_4043 0.70 -1.4
4,557,184 + PP_4043 0.70 +0.3
4,557,185 - PP_4043 0.70 -2.4
4,557,316 - PP_4043 0.84 -1.5
4,557,447 - -1.4
4,557,637 + +1.0
4,557,684 + PP_4044 0.20 +1.9
4,557,684 + PP_4044 0.20 +0.6
4,557,684 + PP_4044 0.20 +1.8
4,557,685 - PP_4044 0.21 -3.7
4,557,718 + PP_4044 0.37 +1.1
4,557,718 + PP_4044 0.37 -2.9
4,557,718 + PP_4044 0.37 -0.0
4,557,718 + PP_4044 0.37 +0.5
4,557,718 + PP_4044 0.37 +0.6
4,557,719 - PP_4044 0.37 -0.9
4,557,719 - PP_4044 0.37 -3.3
4,557,719 - PP_4044 0.37 +1.4
4,557,719 - PP_4044 0.37 -0.6
4,557,719 - PP_4044 0.37 +1.0
4,557,753 + PP_4044 0.54 -0.2
4,557,754 - PP_4044 0.54 +0.2
4,557,952 + PP_4045 0.24 -1.7
4,557,957 + PP_4045 0.25 -0.5
4,557,958 - PP_4045 0.26 -1.6
4,558,168 + -0.7
4,558,168 + -0.5
4,558,169 - +0.0
4,558,307 + PP_4046 0.11 -0.9
4,558,307 + PP_4046 0.11 +1.3
4,558,307 + PP_4046 0.11 +1.6
4,558,308 - PP_4046 0.11 +1.0
4,558,308 - PP_4046 0.11 -0.0

Or see this region's nucleotide sequence