Strain Fitness in Pseudomonas putida KT2440 around PP_0860

Experiment: Growth at pH8 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0858 and PP_0859 overlap by 13 nucleotidesPP_0859 and PP_0860 are separated by 124 nucleotidesPP_0860 and PP_0861 are separated by 231 nucleotides PP_0858: PP_0858 - putative methionine/glutamine aminotransferase, at 992,994 to 994,142 _0858 PP_0859: PP_0859 - putative ketoglutaramate omega-amidase, at 994,130 to 994,921 _0859 PP_0860: PP_0860 - putative Sulfite reductase, flavoprotein component, at 995,046 to 997,595 _0860 PP_0861: PP_0861 - outer membrane ferric siderophore receptor, at 997,827 to 1,000,118 _0861 Position (kb) 995 996 997 998Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 994.076 kb on - strandat 994.129 kb on + strandat 994.145 kb on - strandat 994.145 kb on - strandat 994.211 kb on + strand, within PP_0859at 994.211 kb on + strand, within PP_0859at 994.280 kb on - strand, within PP_0859at 994.338 kb on - strand, within PP_0859at 994.466 kb on + strand, within PP_0859at 994.467 kb on - strand, within PP_0859at 994.467 kb on - strand, within PP_0859at 994.511 kb on + strand, within PP_0859at 994.511 kb on + strand, within PP_0859at 994.578 kb on - strand, within PP_0859at 994.578 kb on - strand, within PP_0859at 994.634 kb on + strand, within PP_0859at 994.635 kb on - strand, within PP_0859at 994.712 kb on + strand, within PP_0859at 994.712 kb on + strand, within PP_0859at 994.713 kb on - strand, within PP_0859at 994.760 kb on + strand, within PP_0859at 994.760 kb on + strand, within PP_0859at 994.761 kb on - strand, within PP_0859at 994.843 kb on - strandat 994.843 kb on - strandat 994.903 kb on + strandat 994.904 kb on - strandat 995.036 kb on + strandat 995.036 kb on + strandat 995.050 kb on + strandat 995.050 kb on + strandat 995.050 kb on + strandat 995.050 kb on + strandat 995.050 kb on + strandat 995.051 kb on - strandat 995.051 kb on - strandat 995.091 kb on + strandat 995.092 kb on - strandat 995.167 kb on + strandat 995.167 kb on + strandat 995.167 kb on + strandat 995.168 kb on - strandat 995.236 kb on + strandat 995.236 kb on + strandat 995.236 kb on + strandat 995.236 kb on + strandat 995.237 kb on - strandat 995.237 kb on - strandat 995.237 kb on - strandat 995.237 kb on - strandat 995.237 kb on - strandat 995.237 kb on - strandat 995.237 kb on - strandat 995.237 kb on - strandat 995.237 kb on - strandat 995.237 kb on - strandat 995.487 kb on - strand, within PP_0860at 995.487 kb on - strand, within PP_0860at 995.838 kb on + strand, within PP_0860at 995.839 kb on - strand, within PP_0860at 995.899 kb on + strand, within PP_0860at 995.900 kb on - strand, within PP_0860at 996.172 kb on + strand, within PP_0860at 996.172 kb on + strand, within PP_0860at 996.172 kb on + strand, within PP_0860at 996.172 kb on + strand, within PP_0860at 996.173 kb on - strand, within PP_0860at 996.500 kb on - strand, within PP_0860at 996.580 kb on + strand, within PP_0860at 996.602 kb on - strand, within PP_0860at 996.602 kb on - strand, within PP_0860at 996.615 kb on + strand, within PP_0860at 996.616 kb on - strand, within PP_0860at 996.616 kb on - strand, within PP_0860at 996.643 kb on + strand, within PP_0860at 996.644 kb on - strand, within PP_0860at 996.779 kb on - strand, within PP_0860at 996.779 kb on - strand, within PP_0860at 996.970 kb on + strand, within PP_0860at 996.971 kb on - strand, within PP_0860at 996.971 kb on - strand, within PP_0860at 996.971 kb on - strand, within PP_0860at 997.007 kb on - strand, within PP_0860at 997.007 kb on - strand, within PP_0860at 997.007 kb on - strand, within PP_0860at 997.194 kb on - strand, within PP_0860at 997.291 kb on + strand, within PP_0860at 997.292 kb on - strand, within PP_0860at 997.292 kb on - strand, within PP_0860at 997.464 kb on + strandat 997.464 kb on + strandat 997.464 kb on + strandat 997.464 kb on + strandat 997.464 kb on + strandat 997.465 kb on - strandat 997.465 kb on - strandat 997.507 kb on + strandat 997.508 kb on - strandat 997.508 kb on - strandat 997.642 kb on + strandat 997.642 kb on + strandat 997.642 kb on + strandat 997.643 kb on - strandat 997.643 kb on - strandat 997.643 kb on - strandat 997.643 kb on - strandat 997.732 kb on + strandat 997.733 kb on - strandat 997.906 kb on + strandat 997.909 kb on + strandat 997.910 kb on - strandat 997.910 kb on - strandat 997.969 kb on + strandat 997.969 kb on + strandat 997.988 kb on - strandat 997.992 kb on + strandat 997.996 kb on + strandat 997.996 kb on + strandat 997.996 kb on + strandat 997.996 kb on + strandat 997.996 kb on + strandat 997.997 kb on - strandat 997.997 kb on - strandat 997.997 kb on - strandat 997.997 kb on - strandat 998.032 kb on + strandat 998.032 kb on + strandat 998.033 kb on - strandat 998.090 kb on - strand, within PP_0861at 998.191 kb on + strand, within PP_0861at 998.191 kb on + strand, within PP_0861at 998.191 kb on + strand, within PP_0861at 998.191 kb on + strand, within PP_0861at 998.192 kb on - strand, within PP_0861at 998.192 kb on - strand, within PP_0861at 998.192 kb on - strand, within PP_0861at 998.192 kb on - strand, within PP_0861at 998.192 kb on - strand, within PP_0861at 998.192 kb on - strand, within PP_0861at 998.192 kb on - strand, within PP_0861at 998.197 kb on + strand, within PP_0861at 998.197 kb on + strand, within PP_0861at 998.197 kb on + strand, within PP_0861at 998.198 kb on - strand, within PP_0861at 998.284 kb on + strand, within PP_0861at 998.284 kb on + strand, within PP_0861at 998.284 kb on + strand, within PP_0861at 998.284 kb on + strand, within PP_0861at 998.288 kb on + strand, within PP_0861at 998.289 kb on - strand, within PP_0861at 998.289 kb on - strand, within PP_0861at 998.289 kb on - strand, within PP_0861at 998.393 kb on - strand, within PP_0861at 998.477 kb on + strand, within PP_0861at 998.478 kb on - strand, within PP_0861at 998.521 kb on + strand, within PP_0861at 998.521 kb on + strand, within PP_0861at 998.521 kb on + strand, within PP_0861at 998.522 kb on - strand, within PP_0861at 998.522 kb on - strand, within PP_0861at 998.530 kb on + strand, within PP_0861at 998.530 kb on + strandat 998.530 kb on + strand, within PP_0861at 998.530 kb on + strand, within PP_0861at 998.530 kb on + strand, within PP_0861at 998.530 kb on + strand, within PP_0861at 998.530 kb on + strand, within PP_0861at 998.531 kb on - strand, within PP_0861at 998.531 kb on - strand, within PP_0861at 998.531 kb on - strand, within PP_0861at 998.531 kb on - strand, within PP_0861at 998.531 kb on - strand, within PP_0861

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose
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994,076 - -1.3
994,129 + +1.0
994,145 - -0.3
994,145 - -1.0
994,211 + PP_0859 0.10 +0.7
994,211 + PP_0859 0.10 +0.7
994,280 - PP_0859 0.19 -2.9
994,338 - PP_0859 0.26 -1.5
994,466 + PP_0859 0.42 -0.9
994,467 - PP_0859 0.43 +1.0
994,467 - PP_0859 0.43 -4.5
994,511 + PP_0859 0.48 -0.3
994,511 + PP_0859 0.48 -1.6
994,578 - PP_0859 0.57 -4.1
994,578 - PP_0859 0.57 +0.7
994,634 + PP_0859 0.64 +0.7
994,635 - PP_0859 0.64 +0.7
994,712 + PP_0859 0.73 -0.3
994,712 + PP_0859 0.73 +0.6
994,713 - PP_0859 0.74 -1.4
994,760 + PP_0859 0.80 +0.1
994,760 + PP_0859 0.80 -1.7
994,761 - PP_0859 0.80 +0.9
994,843 - -0.7
994,843 - -4.6
994,903 + +0.0
994,904 - -0.9
995,036 + -0.5
995,036 + -3.4
995,050 + -1.3
995,050 + +3.1
995,050 + +0.3
995,050 + -0.0
995,050 + -0.6
995,051 - +0.3
995,051 - +1.1
995,091 + +0.5
995,092 - +0.2
995,167 + -4.2
995,167 + -1.3
995,167 + +1.0
995,168 - +0.3
995,236 + +0.8
995,236 + -3.0
995,236 + +0.0
995,236 + +1.3
995,237 - -3.2
995,237 - +0.7
995,237 - -0.6
995,237 - +0.4
995,237 - -3.6
995,237 - -2.1
995,237 - +0.7
995,237 - -0.6
995,237 - -0.6
995,237 - -3.0
995,487 - PP_0860 0.17 -0.2
995,487 - PP_0860 0.17 +0.2
995,838 + PP_0860 0.31 +0.4
995,839 - PP_0860 0.31 -1.8
995,899 + PP_0860 0.33 +0.6
995,900 - PP_0860 0.33 -0.9
996,172 + PP_0860 0.44 +2.1
996,172 + PP_0860 0.44 -0.8
996,172 + PP_0860 0.44 -3.5
996,172 + PP_0860 0.44 -0.8
996,173 - PP_0860 0.44 -0.3
996,500 - PP_0860 0.57 -0.3
996,580 + PP_0860 0.60 +0.6
996,602 - PP_0860 0.61 -3.0
996,602 - PP_0860 0.61 +1.0
996,615 + PP_0860 0.62 +0.5
996,616 - PP_0860 0.62 -3.6
996,616 - PP_0860 0.62 -3.6
996,643 + PP_0860 0.63 +0.8
996,644 - PP_0860 0.63 +1.2
996,779 - PP_0860 0.68 -3.3
996,779 - PP_0860 0.68 -0.8
996,970 + PP_0860 0.75 -3.9
996,971 - PP_0860 0.75 +1.2
996,971 - PP_0860 0.75 -0.6
996,971 - PP_0860 0.75 -0.4
997,007 - PP_0860 0.77 -3.5
997,007 - PP_0860 0.77 -2.3
997,007 - PP_0860 0.77 +0.6
997,194 - PP_0860 0.84 +0.1
997,291 + PP_0860 0.88 -3.4
997,292 - PP_0860 0.88 -2.6
997,292 - PP_0860 0.88 -1.4
997,464 + -0.2
997,464 + -2.1
997,464 + +0.9
997,464 + -0.1
997,464 + -3.6
997,465 - -2.0
997,465 - +0.2
997,507 + +0.3
997,508 - +0.9
997,508 - -0.4
997,642 + -0.1
997,642 + -0.2
997,642 + +0.1
997,643 - -2.3
997,643 - -3.9
997,643 - +0.1
997,643 - +0.5
997,732 + -1.8
997,733 - +1.6
997,906 + +1.1
997,909 + +0.5
997,910 - -0.1
997,910 - -0.4
997,969 + +1.1
997,969 + +1.2
997,988 - +0.1
997,992 + -0.0
997,996 + -1.0
997,996 + +0.6
997,996 + +0.1
997,996 + +0.5
997,996 + +0.5
997,997 - -0.7
997,997 - -0.1
997,997 - +0.3
997,997 - +0.2
998,032 + +1.4
998,032 + +1.0
998,033 - -1.1
998,090 - PP_0861 0.11 +0.7
998,191 + PP_0861 0.16 +0.2
998,191 + PP_0861 0.16 +0.8
998,191 + PP_0861 0.16 +0.5
998,191 + PP_0861 0.16 +1.7
998,192 - PP_0861 0.16 +0.7
998,192 - PP_0861 0.16 +1.4
998,192 - PP_0861 0.16 +1.1
998,192 - PP_0861 0.16 +2.8
998,192 - PP_0861 0.16 +1.7
998,192 - PP_0861 0.16 -1.6
998,192 - PP_0861 0.16 -0.3
998,197 + PP_0861 0.16 +1.3
998,197 + PP_0861 0.16 +1.7
998,197 + PP_0861 0.16 -0.4
998,198 - PP_0861 0.16 +0.9
998,284 + PP_0861 0.20 -1.5
998,284 + PP_0861 0.20 +1.8
998,284 + PP_0861 0.20 +1.0
998,284 + PP_0861 0.20 -0.1
998,288 + PP_0861 0.20 -3.1
998,289 - PP_0861 0.20 -1.2
998,289 - PP_0861 0.20 -0.9
998,289 - PP_0861 0.20 -1.8
998,393 - PP_0861 0.25 +0.5
998,477 + PP_0861 0.28 +0.9
998,478 - PP_0861 0.28 +0.6
998,521 + PP_0861 0.30 +0.8
998,521 + PP_0861 0.30 -3.7
998,521 + PP_0861 0.30 +0.2
998,522 - PP_0861 0.30 +1.0
998,522 - PP_0861 0.30 -1.3
998,530 + PP_0861 0.31 -0.7
998,530 + -0.2
998,530 + PP_0861 0.31 -2.1
998,530 + PP_0861 0.31 +1.4
998,530 + PP_0861 0.31 -0.7
998,530 + PP_0861 0.31 +2.1
998,530 + PP_0861 0.31 +0.3
998,531 - PP_0861 0.31 +0.3
998,531 - PP_0861 0.31 -1.5
998,531 - PP_0861 0.31 -4.2
998,531 - PP_0861 0.31 +1.9
998,531 - PP_0861 0.31 +0.1

Or see this region's nucleotide sequence