Strain Fitness in Pseudomonas putida KT2440 around PP_5455

Experiment: Growth at pH7 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0696 and PP_0697 overlap by 4 nucleotidesPP_0697 and PP_5455 are separated by 57 nucleotidesPP_5455 and PP_0698 overlap by 61 nucleotides PP_0696: PP_0696 - conserved protein of unknown function, at 809,434 to 810,309 _0696 PP_0697: PP_0697 - ribosomal-protein-S18-alanine N-acetyltransferase, at 810,306 to 810,761 _0697 PP_5455: PP_5455 - conserved exported protein of unknown function, at 810,819 to 811,394 _5455 PP_0698: PP_0698 - Transcriptional regulator, LysR family, at 811,334 to 812,251 _0698 Position (kb) 810 811 812Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 810.359 kb on - strand, within PP_0697at 810.359 kb on - strand, within PP_0697at 810.362 kb on + strand, within PP_0697at 810.362 kb on + strand, within PP_0697at 810.362 kb on + strand, within PP_0697at 810.362 kb on + strand, within PP_0697at 810.362 kb on + strand, within PP_0697at 810.363 kb on - strand, within PP_0697at 810.372 kb on + strand, within PP_0697at 810.588 kb on + strand, within PP_0697at 810.589 kb on - strand, within PP_0697at 810.645 kb on + strand, within PP_0697at 810.646 kb on - strand, within PP_0697at 810.655 kb on - strand, within PP_0697at 810.663 kb on + strand, within PP_0697at 810.696 kb on + strand, within PP_0697at 810.696 kb on + strand, within PP_0697at 810.696 kb on + strand, within PP_0697at 810.696 kb on + strand, within PP_0697at 810.697 kb on - strand, within PP_0697at 810.697 kb on - strand, within PP_0697at 810.697 kb on - strand, within PP_0697at 810.697 kb on - strand, within PP_0697at 810.700 kb on - strand, within PP_0697at 810.743 kb on + strandat 810.744 kb on - strandat 810.813 kb on + strandat 810.851 kb on + strandat 810.851 kb on + strandat 810.851 kb on + strandat 810.851 kb on + strandat 810.852 kb on - strandat 810.946 kb on + strand, within PP_5455at 810.947 kb on - strand, within PP_5455at 810.947 kb on - strand, within PP_5455at 810.960 kb on + strand, within PP_5455at 810.968 kb on - strand, within PP_5455at 810.968 kb on - strand, within PP_5455at 811.036 kb on + strand, within PP_5455at 811.190 kb on + strand, within PP_5455at 811.211 kb on + strand, within PP_5455at 811.212 kb on - strand, within PP_5455at 811.213 kb on + strand, within PP_5455at 811.214 kb on - strand, within PP_5455at 811.379 kb on + strandat 811.379 kb on + strandat 811.379 kb on + strandat 811.379 kb on + strandat 811.485 kb on + strand, within PP_0698at 811.611 kb on + strand, within PP_0698at 811.612 kb on - strand, within PP_0698at 811.788 kb on + strand, within PP_0698at 811.788 kb on + strand, within PP_0698at 811.788 kb on + strand, within PP_0698at 811.789 kb on - strand, within PP_0698at 811.789 kb on - strand, within PP_0698at 811.789 kb on - strandat 812.135 kb on + strand, within PP_0698at 812.136 kb on - strand, within PP_0698at 812.136 kb on - strand, within PP_0698at 812.136 kb on - strand, within PP_0698at 812.136 kb on - strand, within PP_0698at 812.136 kb on - strand, within PP_0698at 812.301 kb on - strandat 812.301 kb on - strandat 812.301 kb on - strandat 812.312 kb on + strandat 812.312 kb on + strandat 812.312 kb on + strandat 812.312 kb on + strandat 812.313 kb on - strandat 812.313 kb on - strandat 812.313 kb on - strandat 812.313 kb on - strandat 812.323 kb on - strandat 812.361 kb on + strandat 812.362 kb on - strandat 812.362 kb on - strandat 812.362 kb on - strandat 812.366 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH7 and (C) D-Glucose
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810,359 - PP_0697 0.12 -3.0
810,359 - PP_0697 0.12 -2.3
810,362 + PP_0697 0.12 -4.2
810,362 + PP_0697 0.12 +0.7
810,362 + PP_0697 0.12 +1.4
810,362 + PP_0697 0.12 +0.0
810,362 + PP_0697 0.12 +1.4
810,363 - PP_0697 0.12 -0.5
810,372 + PP_0697 0.14 -3.3
810,588 + PP_0697 0.62 -2.9
810,589 - PP_0697 0.62 +1.0
810,645 + PP_0697 0.74 +2.6
810,646 - PP_0697 0.75 -2.3
810,655 - PP_0697 0.77 +2.8
810,663 + PP_0697 0.78 -2.6
810,696 + PP_0697 0.86 -3.3
810,696 + PP_0697 0.86 -4.1
810,696 + PP_0697 0.86 -2.2
810,696 + PP_0697 0.86 +0.9
810,697 - PP_0697 0.86 -0.1
810,697 - PP_0697 0.86 +2.1
810,697 - PP_0697 0.86 +2.2
810,697 - PP_0697 0.86 +2.5
810,700 - PP_0697 0.86 -3.5
810,743 + -2.6
810,744 - -1.7
810,813 + +1.9
810,851 + +0.4
810,851 + +0.6
810,851 + +1.5
810,851 + +0.6
810,852 - -2.3
810,946 + PP_5455 0.22 -3.4
810,947 - PP_5455 0.22 +0.8
810,947 - PP_5455 0.22 -1.9
810,960 + PP_5455 0.24 -3.3
810,968 - PP_5455 0.26 +0.8
810,968 - PP_5455 0.26 +0.3
811,036 + PP_5455 0.38 +2.3
811,190 + PP_5455 0.64 -1.7
811,211 + PP_5455 0.68 -3.7
811,212 - PP_5455 0.68 -1.7
811,213 + PP_5455 0.68 -0.1
811,214 - PP_5455 0.69 -3.4
811,379 + +0.8
811,379 + -1.3
811,379 + -2.5
811,379 + +0.8
811,485 + PP_0698 0.16 -0.8
811,611 + PP_0698 0.30 -0.0
811,612 - PP_0698 0.30 -1.4
811,788 + PP_0698 0.49 +0.9
811,788 + PP_0698 0.49 +0.0
811,788 + PP_0698 0.49 +0.1
811,789 - PP_0698 0.50 -1.2
811,789 - PP_0698 0.50 +1.2
811,789 - +0.6
812,135 + PP_0698 0.87 -3.0
812,136 - PP_0698 0.87 +2.8
812,136 - PP_0698 0.87 +1.1
812,136 - PP_0698 0.87 -2.7
812,136 - PP_0698 0.87 -3.7
812,136 - PP_0698 0.87 -1.4
812,301 - -3.2
812,301 - +0.3
812,301 - -4.5
812,312 + +0.8
812,312 + +0.2
812,312 + -0.8
812,312 + +0.7
812,313 - +0.9
812,313 - +0.9
812,313 - +0.3
812,313 - +1.4
812,323 - -2.1
812,361 + -2.6
812,362 - -4.6
812,362 - -0.5
812,362 - +0.3
812,366 - +1.2

Or see this region's nucleotide sequence