Experiment: Growth at pH7 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5152 and PP_5153 are separated by 182 nucleotides PP_5153 and PP_5154 are separated by 26 nucleotides PP_5154 and PP_5155 are separated by 201 nucleotides
PP_5152: PP_5152 - conserved exported protein of unknown function, at 5,878,076 to 5,878,996
_5152
PP_5153: PP_5153 - putative isomerase/hydrolase, at 5,879,179 to 5,879,844
_5153
PP_5154: PP_5154 - putative Oxidoreductase, FAD-binding, at 5,879,871 to 5,881,238
_5154
PP_5155: PP_5155 - D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase, at 5,881,440 to 5,882,669
_5155
Position (kb) 5879
5880
5881
5882 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5878.950 kb on + strand at 5878.951 kb on - strand at 5878.951 kb on - strand at 5878.951 kb on - strand at 5879.021 kb on + strand at 5879.021 kb on + strand at 5879.103 kb on - strand at 5879.112 kb on + strand at 5879.112 kb on + strand at 5879.113 kb on - strand at 5879.138 kb on - strand at 5879.138 kb on - strand at 5879.358 kb on + strand, within PP_5153 at 5879.358 kb on + strand, within PP_5153 at 5879.359 kb on - strand, within PP_5153 at 5879.359 kb on - strand, within PP_5153 at 5879.359 kb on - strand, within PP_5153 at 5879.362 kb on - strand, within PP_5153 at 5879.362 kb on - strand, within PP_5153 at 5879.362 kb on - strand, within PP_5153 at 5879.362 kb on - strand, within PP_5153 at 5879.374 kb on + strand, within PP_5153 at 5879.636 kb on + strand, within PP_5153 at 5879.637 kb on - strand, within PP_5153 at 5879.765 kb on + strand, within PP_5153 at 5879.765 kb on + strand, within PP_5153 at 5879.765 kb on + strand, within PP_5153 at 5879.766 kb on - strand at 5879.766 kb on - strand, within PP_5153 at 5879.821 kb on + strand at 5879.821 kb on + strand at 5879.821 kb on + strand at 5879.821 kb on + strand at 5879.822 kb on - strand at 5879.825 kb on + strand at 5879.825 kb on + strand at 5879.826 kb on - strand at 5879.826 kb on - strand at 5879.838 kb on - strand at 5879.912 kb on + strand at 5879.931 kb on + strand at 5879.931 kb on + strand at 5879.931 kb on + strand at 5879.931 kb on + strand at 5879.931 kb on + strand at 5879.932 kb on - strand at 5879.932 kb on - strand at 5879.932 kb on - strand at 5879.932 kb on - strand at 5879.971 kb on + strand at 5879.971 kb on + strand at 5879.980 kb on + strand at 5880.031 kb on + strand, within PP_5154 at 5880.101 kb on + strand, within PP_5154 at 5880.101 kb on + strand, within PP_5154 at 5880.101 kb on + strand, within PP_5154 at 5880.101 kb on + strand, within PP_5154 at 5880.101 kb on + strand, within PP_5154 at 5880.102 kb on - strand, within PP_5154 at 5880.102 kb on - strand, within PP_5154 at 5880.102 kb on - strand, within PP_5154 at 5880.102 kb on - strand, within PP_5154 at 5880.102 kb on - strand, within PP_5154 at 5880.154 kb on + strand, within PP_5154 at 5880.155 kb on - strand, within PP_5154 at 5880.170 kb on - strand, within PP_5154 at 5880.256 kb on + strand, within PP_5154 at 5880.289 kb on + strand, within PP_5154 at 5880.290 kb on - strand, within PP_5154 at 5880.290 kb on - strand, within PP_5154 at 5880.383 kb on + strand, within PP_5154 at 5880.439 kb on + strand, within PP_5154 at 5880.439 kb on + strand, within PP_5154 at 5880.440 kb on - strand, within PP_5154 at 5880.440 kb on - strand, within PP_5154 at 5880.794 kb on + strand, within PP_5154 at 5880.794 kb on + strand, within PP_5154 at 5880.794 kb on + strand, within PP_5154 at 5880.886 kb on + strand, within PP_5154 at 5880.886 kb on + strand, within PP_5154 at 5880.991 kb on + strand, within PP_5154 at 5881.120 kb on - strand at 5881.183 kb on + strand at 5881.183 kb on + strand at 5881.184 kb on - strand at 5881.250 kb on + strand at 5881.250 kb on + strand at 5881.250 kb on + strand at 5881.251 kb on - strand at 5881.286 kb on + strand at 5881.286 kb on + strand at 5881.287 kb on - strand at 5881.287 kb on - strand at 5881.344 kb on + strand at 5881.344 kb on + strand at 5881.345 kb on - strand at 5881.345 kb on - strand at 5881.345 kb on - strand at 5881.349 kb on + strand at 5881.349 kb on + strand at 5881.349 kb on + strand at 5881.350 kb on - strand at 5881.350 kb on - strand at 5881.350 kb on - strand at 5881.354 kb on + strand at 5881.354 kb on + strand at 5881.354 kb on + strand at 5881.355 kb on - strand at 5881.355 kb on - strand at 5881.375 kb on + strand at 5881.375 kb on + strand at 5881.376 kb on - strand at 5881.376 kb on - strand at 5881.376 kb on - strand at 5881.434 kb on - strand at 5881.548 kb on + strand at 5881.549 kb on - strand at 5881.549 kb on - strand at 5881.756 kb on - strand, within PP_5155 at 5881.756 kb on - strand, within PP_5155 at 5881.929 kb on - strand, within PP_5155 at 5881.971 kb on + strand, within PP_5155 at 5881.971 kb on + strand, within PP_5155 at 5881.972 kb on - strand, within PP_5155 at 5881.972 kb on - strand, within PP_5155
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH7 and (C) D-Glucose remove 5,878,950 + -2.0 5,878,951 - +1.1 5,878,951 - -0.1 5,878,951 - -3.4 5,879,021 + -1.2 5,879,021 + -0.7 5,879,103 - +0.0 5,879,112 + -0.9 5,879,112 + +0.1 5,879,113 - +0.5 5,879,138 - +1.0 5,879,138 - +0.4 5,879,358 + PP_5153 0.27 +0.7 5,879,358 + PP_5153 0.27 +2.6 5,879,359 - PP_5153 0.27 -3.2 5,879,359 - PP_5153 0.27 -0.1 5,879,359 - PP_5153 0.27 +2.0 5,879,362 - PP_5153 0.27 -3.4 5,879,362 - PP_5153 0.27 +0.5 5,879,362 - PP_5153 0.27 +0.8 5,879,362 - PP_5153 0.27 -3.7 5,879,374 + PP_5153 0.29 -0.7 5,879,636 + PP_5153 0.69 +0.5 5,879,637 - PP_5153 0.69 -3.1 5,879,765 + PP_5153 0.88 -4.1 5,879,765 + PP_5153 0.88 -1.0 5,879,765 + PP_5153 0.88 -2.2 5,879,766 - +0.1 5,879,766 - PP_5153 0.88 +0.3 5,879,821 + -0.4 5,879,821 + +2.2 5,879,821 + +2.4 5,879,821 + -0.6 5,879,822 - +0.4 5,879,825 + -1.8 5,879,825 + +1.0 5,879,826 - +1.3 5,879,826 - +0.5 5,879,838 - +2.4 5,879,912 + +1.7 5,879,931 + +1.2 5,879,931 + +1.7 5,879,931 + +0.0 5,879,931 + +1.0 5,879,931 + +1.5 5,879,932 - -2.2 5,879,932 - -1.5 5,879,932 - +1.2 5,879,932 - -3.1 5,879,971 + +0.3 5,879,971 + -1.5 5,879,980 + +0.1 5,880,031 + PP_5154 0.12 -0.4 5,880,101 + PP_5154 0.17 -0.5 5,880,101 + PP_5154 0.17 -0.3 5,880,101 + PP_5154 0.17 +0.3 5,880,101 + PP_5154 0.17 +1.0 5,880,101 + PP_5154 0.17 -0.2 5,880,102 - PP_5154 0.17 +0.1 5,880,102 - PP_5154 0.17 +2.2 5,880,102 - PP_5154 0.17 +0.8 5,880,102 - PP_5154 0.17 +0.4 5,880,102 - PP_5154 0.17 -3.1 5,880,154 + PP_5154 0.21 -2.7 5,880,155 - PP_5154 0.21 -2.6 5,880,170 - PP_5154 0.22 +2.5 5,880,256 + PP_5154 0.28 +2.5 5,880,289 + PP_5154 0.31 +0.7 5,880,290 - PP_5154 0.31 +2.1 5,880,290 - PP_5154 0.31 -0.5 5,880,383 + PP_5154 0.37 +2.9 5,880,439 + PP_5154 0.42 +0.7 5,880,439 + PP_5154 0.42 +1.1 5,880,440 - PP_5154 0.42 -3.3 5,880,440 - PP_5154 0.42 -0.4 5,880,794 + PP_5154 0.67 +0.0 5,880,794 + PP_5154 0.67 -0.1 5,880,794 + PP_5154 0.67 +1.8 5,880,886 + PP_5154 0.74 +1.5 5,880,886 + PP_5154 0.74 -2.7 5,880,991 + PP_5154 0.82 +0.5 5,881,120 - +0.5 5,881,183 + -3.0 5,881,183 + -2.4 5,881,184 - +0.4 5,881,250 + +0.6 5,881,250 + +0.2 5,881,250 + -4.1 5,881,251 - +1.5 5,881,286 + -1.0 5,881,286 + -4.2 5,881,287 - +0.1 5,881,287 - -0.7 5,881,344 + +0.8 5,881,344 + +2.1 5,881,345 - -3.9 5,881,345 - +0.3 5,881,345 - -3.2 5,881,349 + -0.3 5,881,349 + -2.6 5,881,349 + +1.4 5,881,350 - -1.0 5,881,350 - -2.7 5,881,350 - -0.3 5,881,354 + -2.8 5,881,354 + +2.1 5,881,354 + +0.0 5,881,355 - -3.5 5,881,355 - -4.3 5,881,375 + +1.9 5,881,375 + +1.1 5,881,376 - -2.5 5,881,376 - -2.4 5,881,376 - -4.4 5,881,434 - -3.0 5,881,548 + -0.7 5,881,549 - -2.9 5,881,549 - -0.9 5,881,756 - PP_5155 0.26 -1.4 5,881,756 - PP_5155 0.26 -0.8 5,881,929 - PP_5155 0.40 -3.4 5,881,971 + PP_5155 0.43 -3.3 5,881,971 + PP_5155 0.43 -3.5 5,881,972 - PP_5155 0.43 -3.5 5,881,972 - PP_5155 0.43 -2.6
Or see this region's nucleotide sequence