Experiment: Growth at pH7 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4951 and PP_4952 are separated by 64 nucleotides PP_4952 and PP_4953 are separated by 122 nucleotides
PP_4951: PP_4951 - Drug resistance transporter, EmrB/QacA family, at 5,640,338 to 5,641,765
_4951
PP_4952: PP_4952 - ATP-dependent RNA helicase, specific for 23S rRNA, at 5,641,830 to 5,643,215
_4952
PP_4953: PP_4953 - putative oxidoreductase with FAD/NAD(P)-binding domain, at 5,643,338 to 5,644,519
_4953
Position (kb) 5641
5642
5643
5644 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 5640.975 kb on + strand, within PP_4951 at 5640.976 kb on - strand, within PP_4951 at 5640.976 kb on - strand, within PP_4951 at 5641.232 kb on + strand, within PP_4951 at 5641.233 kb on - strand, within PP_4951 at 5641.348 kb on + strand, within PP_4951 at 5641.348 kb on + strand, within PP_4951 at 5641.349 kb on - strand, within PP_4951 at 5641.351 kb on + strand, within PP_4951 at 5641.352 kb on - strand, within PP_4951 at 5641.601 kb on - strand, within PP_4951 at 5641.674 kb on + strand at 5641.674 kb on + strand at 5641.675 kb on - strand at 5641.675 kb on - strand at 5641.675 kb on - strand at 5641.787 kb on + strand at 5641.787 kb on + strand at 5641.787 kb on + strand at 5641.788 kb on - strand at 5641.788 kb on - strand at 5641.792 kb on + strand at 5641.792 kb on + strand at 5641.793 kb on - strand at 5641.793 kb on - strand at 5641.793 kb on - strand at 5641.793 kb on - strand at 5641.905 kb on + strand at 5641.905 kb on + strand at 5642.398 kb on - strand, within PP_4952 at 5642.921 kb on + strand, within PP_4952 at 5643.210 kb on - strand at 5643.213 kb on + strand at 5643.214 kb on - strand at 5643.214 kb on - strand at 5643.235 kb on + strand at 5643.504 kb on - strand, within PP_4953 at 5643.615 kb on - strand, within PP_4953
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH7 and (C) D-Glucose remove 5,640,975 + PP_4951 0.45 -3.4 5,640,976 - PP_4951 0.45 +1.3 5,640,976 - PP_4951 0.45 -3.4 5,641,232 + PP_4951 0.63 -4.3 5,641,233 - PP_4951 0.63 -2.3 5,641,348 + PP_4951 0.71 -4.2 5,641,348 + PP_4951 0.71 -2.3 5,641,349 - PP_4951 0.71 -0.3 5,641,351 + PP_4951 0.71 -0.2 5,641,352 - PP_4951 0.71 -2.2 5,641,601 - PP_4951 0.88 +0.1 5,641,674 + -3.1 5,641,674 + +1.3 5,641,675 - -3.4 5,641,675 - +1.3 5,641,675 - +3.8 5,641,787 + -5.0 5,641,787 + +0.4 5,641,787 + +0.4 5,641,788 - -0.2 5,641,788 - -2.7 5,641,792 + +0.9 5,641,792 + -3.5 5,641,793 - +2.1 5,641,793 - -1.6 5,641,793 - -3.3 5,641,793 - -3.0 5,641,905 + +0.8 5,641,905 + +0.6 5,642,398 - PP_4952 0.41 -0.5 5,642,921 + PP_4952 0.79 -3.5 5,643,210 - -0.8 5,643,213 + -0.5 5,643,214 - +0.1 5,643,214 - +1.5 5,643,235 + -3.5 5,643,504 - PP_4953 0.14 +1.1 5,643,615 - PP_4953 0.23 +1.1
Or see this region's nucleotide sequence