Experiment: Growth at pH7 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4560 and PP_4561 are separated by 153 nucleotides PP_4561 and PP_4562 are separated by 235 nucleotides PP_4562 and PP_4563 are separated by 5 nucleotides PP_4563 and PP_4564 are separated by 130 nucleotides
PP_4560: PP_4560 - putative Ribonuclease BN, at 5,180,986 to 5,181,942
_4560
PP_4561: PP_4561 - stress response protein, at 5,182,096 to 5,182,275
_4561
PP_4562: PP_4562 - conserved protein of unknown function, at 5,182,511 to 5,182,891
_4562
PP_4563: PP_4563 - conserved protein of unknown function, at 5,182,897 to 5,183,733
_4563
PP_4564: PP_4564 - putative Lipoprotein, at 5,183,864 to 5,184,724
_4564
Position (kb) 5182
5183
5184 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5181.942 kb on + strand at 5181.969 kb on + strand at 5181.969 kb on + strand at 5181.983 kb on + strand at 5181.983 kb on + strand at 5181.984 kb on - strand at 5181.984 kb on - strand at 5181.984 kb on - strand at 5181.986 kb on + strand at 5181.986 kb on + strand at 5181.987 kb on - strand at 5182.042 kb on + strand at 5182.042 kb on + strand at 5182.042 kb on + strand at 5182.043 kb on - strand at 5182.043 kb on - strand at 5182.187 kb on + strand, within PP_4561 at 5182.263 kb on + strand at 5182.264 kb on - strand at 5182.264 kb on - strand at 5182.381 kb on - strand at 5182.487 kb on + strand at 5182.487 kb on + strand at 5182.488 kb on - strand at 5182.881 kb on + strand at 5182.882 kb on - strand at 5182.890 kb on - strand at 5182.890 kb on - strand at 5183.301 kb on - strand, within PP_4563 at 5183.301 kb on - strand, within PP_4563 at 5183.301 kb on - strand, within PP_4563 at 5183.324 kb on + strand, within PP_4563 at 5183.375 kb on + strand, within PP_4563 at 5183.376 kb on - strand, within PP_4563 at 5183.393 kb on + strand, within PP_4563 at 5183.394 kb on - strand, within PP_4563 at 5183.394 kb on - strand, within PP_4563 at 5183.472 kb on + strand, within PP_4563 at 5183.473 kb on - strand, within PP_4563 at 5183.573 kb on + strand, within PP_4563 at 5183.573 kb on + strand, within PP_4563 at 5183.573 kb on + strand, within PP_4563 at 5183.574 kb on - strand, within PP_4563 at 5183.627 kb on + strand, within PP_4563 at 5183.627 kb on + strand, within PP_4563 at 5183.627 kb on + strand, within PP_4563 at 5183.628 kb on - strand, within PP_4563 at 5183.628 kb on - strand, within PP_4563 at 5183.628 kb on - strand at 5183.628 kb on - strand, within PP_4563 at 5183.628 kb on - strand, within PP_4563 at 5183.714 kb on + strand at 5183.766 kb on + strand at 5183.767 kb on - strand at 5183.767 kb on - strand at 5183.831 kb on + strand at 5183.831 kb on + strand at 5183.832 kb on - strand at 5183.832 kb on - strand at 5183.832 kb on - strand at 5183.871 kb on + strand at 5183.872 kb on - strand at 5183.893 kb on + strand at 5184.103 kb on - strand, within PP_4564 at 5184.246 kb on + strand, within PP_4564 at 5184.247 kb on - strand, within PP_4564 at 5184.299 kb on + strand, within PP_4564 at 5184.299 kb on + strand, within PP_4564 at 5184.299 kb on + strand, within PP_4564 at 5184.300 kb on - strand, within PP_4564 at 5184.300 kb on - strand, within PP_4564
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH7 and (C) D-Glucose remove 5,181,942 + +2.1 5,181,969 + -2.1 5,181,969 + +0.3 5,181,983 + +1.3 5,181,983 + +1.7 5,181,984 - +0.9 5,181,984 - -3.0 5,181,984 - +0.2 5,181,986 + -3.5 5,181,986 + -2.6 5,181,987 - +0.3 5,182,042 + +0.5 5,182,042 + -4.1 5,182,042 + +1.9 5,182,043 - +0.3 5,182,043 - -0.1 5,182,187 + PP_4561 0.51 +0.6 5,182,263 + +0.9 5,182,264 - +0.4 5,182,264 - -0.2 5,182,381 - -2.6 5,182,487 + -1.4 5,182,487 + +1.4 5,182,488 - -3.8 5,182,881 + -4.2 5,182,882 - -0.5 5,182,890 - -1.3 5,182,890 - -0.3 5,183,301 - PP_4563 0.48 +0.7 5,183,301 - PP_4563 0.48 -0.3 5,183,301 - PP_4563 0.48 +1.0 5,183,324 + PP_4563 0.51 -4.2 5,183,375 + PP_4563 0.57 -3.6 5,183,376 - PP_4563 0.57 -2.8 5,183,393 + PP_4563 0.59 +1.3 5,183,394 - PP_4563 0.59 -0.9 5,183,394 - PP_4563 0.59 +1.1 5,183,472 + PP_4563 0.69 -2.4 5,183,473 - PP_4563 0.69 -0.9 5,183,573 + PP_4563 0.81 -0.5 5,183,573 + PP_4563 0.81 +1.1 5,183,573 + PP_4563 0.81 -2.0 5,183,574 - PP_4563 0.81 -0.1 5,183,627 + PP_4563 0.87 -3.7 5,183,627 + PP_4563 0.87 +0.3 5,183,627 + PP_4563 0.87 -4.3 5,183,628 - PP_4563 0.87 -3.9 5,183,628 - PP_4563 0.87 -4.1 5,183,628 - +0.9 5,183,628 - PP_4563 0.87 -0.0 5,183,628 - PP_4563 0.87 -3.8 5,183,714 + -0.4 5,183,766 + -0.7 5,183,767 - +0.9 5,183,767 - -1.3 5,183,831 + +0.4 5,183,831 + +1.7 5,183,832 - -1.0 5,183,832 - +0.4 5,183,832 - -0.6 5,183,871 + -2.7 5,183,872 - +2.7 5,183,893 + +1.9 5,184,103 - PP_4564 0.28 -0.1 5,184,246 + PP_4564 0.44 +1.3 5,184,247 - PP_4564 0.44 +0.4 5,184,299 + PP_4564 0.51 -2.6 5,184,299 + PP_4564 0.51 +0.5 5,184,299 + PP_4564 0.51 -0.3 5,184,300 - PP_4564 0.51 -1.2 5,184,300 - PP_4564 0.51 -4.2
Or see this region's nucleotide sequence