Experiment: Growth at pH7 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4550 and PP_4551 are separated by 218 nucleotides PP_4551 and PP_4552 are separated by 34 nucleotides PP_4552 and PP_4553 are separated by 116 nucleotides
PP_4550: PP_4550 - long-chain-fatty-acid/CoA ligase, at 5,173,291 to 5,174,979
_4550
PP_4551: PP_4551 - Hydrolase, alpha/beta fold family, at 5,175,198 to 5,176,142
_4551
PP_4552: PP_4552 - putative conserved enzyme of unknown function, at 5,176,177 to 5,176,647
_4552
PP_4553: PP_4553 - RNA polymerase sigma-70 factor, ECF subfamily, at 5,176,764 to 5,177,984
_4553
Position (kb) 5175
5176
5177 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5174.444 kb on + strand, within PP_4550 at 5174.598 kb on - strand, within PP_4550 at 5174.825 kb on + strand at 5174.825 kb on + strand at 5174.826 kb on - strand at 5174.912 kb on + strand at 5174.913 kb on - strand at 5174.920 kb on + strand at 5174.981 kb on + strand at 5174.982 kb on - strand at 5174.982 kb on - strand at 5174.984 kb on + strand at 5174.984 kb on + strand at 5174.984 kb on + strand at 5174.984 kb on + strand at 5174.985 kb on - strand at 5175.019 kb on + strand at 5175.019 kb on + strand at 5175.020 kb on - strand at 5175.020 kb on - strand at 5175.020 kb on - strand at 5175.027 kb on + strand at 5175.028 kb on - strand at 5175.028 kb on - strand at 5175.068 kb on - strand at 5175.074 kb on + strand at 5175.090 kb on + strand at 5175.090 kb on + strand at 5175.090 kb on + strand at 5175.090 kb on + strand at 5175.090 kb on + strand at 5175.091 kb on - strand at 5175.091 kb on - strand at 5175.091 kb on - strand at 5175.091 kb on - strand at 5175.092 kb on + strand at 5175.092 kb on + strand at 5175.092 kb on + strand at 5175.092 kb on + strand at 5175.093 kb on - strand at 5175.093 kb on - strand at 5175.093 kb on - strand at 5175.093 kb on - strand at 5175.125 kb on + strand at 5175.126 kb on - strand at 5175.126 kb on - strand at 5175.126 kb on - strand at 5175.161 kb on + strand at 5175.161 kb on + strand at 5175.161 kb on + strand at 5175.162 kb on - strand at 5175.162 kb on - strand at 5175.162 kb on - strand at 5175.162 kb on - strand at 5175.246 kb on + strand at 5175.250 kb on + strand at 5175.250 kb on + strand at 5175.250 kb on + strand at 5175.250 kb on + strand at 5175.250 kb on + strand at 5175.250 kb on + strand at 5175.251 kb on - strand at 5175.251 kb on - strand at 5175.251 kb on - strand at 5175.251 kb on - strand at 5175.251 kb on - strand at 5175.277 kb on + strand at 5175.277 kb on + strand at 5175.277 kb on + strand at 5175.547 kb on - strand, within PP_4551 at 5175.547 kb on - strand, within PP_4551 at 5175.547 kb on - strand, within PP_4551 at 5175.561 kb on + strand, within PP_4551 at 5175.561 kb on + strand, within PP_4551 at 5175.616 kb on - strand, within PP_4551 at 5175.616 kb on - strand, within PP_4551 at 5175.616 kb on - strand, within PP_4551 at 5175.798 kb on + strand, within PP_4551 at 5176.012 kb on + strand, within PP_4551 at 5176.012 kb on + strand, within PP_4551 at 5176.012 kb on + strand, within PP_4551 at 5176.012 kb on + strand, within PP_4551 at 5176.012 kb on + strand, within PP_4551 at 5176.013 kb on - strand, within PP_4551 at 5176.013 kb on - strand, within PP_4551 at 5176.013 kb on - strand, within PP_4551 at 5176.013 kb on - strand, within PP_4551 at 5176.013 kb on - strand, within PP_4551 at 5176.013 kb on - strand, within PP_4551 at 5176.013 kb on - strand, within PP_4551 at 5176.013 kb on - strand, within PP_4551 at 5176.013 kb on - strand, within PP_4551 at 5176.026 kb on + strand, within PP_4551 at 5176.048 kb on + strand at 5176.712 kb on + strand at 5176.794 kb on - strand at 5176.913 kb on - strand, within PP_4553 at 5176.913 kb on - strand, within PP_4553 at 5176.913 kb on - strand, within PP_4553 at 5177.047 kb on + strand, within PP_4553 at 5177.048 kb on - strand, within PP_4553 at 5177.048 kb on - strand, within PP_4553 at 5177.048 kb on - strand, within PP_4553 at 5177.129 kb on + strand, within PP_4553 at 5177.130 kb on - strand, within PP_4553 at 5177.131 kb on + strand, within PP_4553 at 5177.131 kb on + strand, within PP_4553 at 5177.131 kb on + strand, within PP_4553 at 5177.132 kb on - strand, within PP_4553 at 5177.132 kb on - strand, within PP_4553
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH7 and (C) D-Glucose remove 5,174,444 + PP_4550 0.68 +0.5 5,174,598 - PP_4550 0.77 -2.8 5,174,825 + +2.5 5,174,825 + +0.2 5,174,826 - -3.6 5,174,912 + +0.7 5,174,913 - +0.1 5,174,920 + +0.4 5,174,981 + +2.5 5,174,982 - -2.5 5,174,982 - +1.7 5,174,984 + -2.7 5,174,984 + -1.8 5,174,984 + -3.0 5,174,984 + -1.4 5,174,985 - -0.8 5,175,019 + +0.6 5,175,019 + +1.9 5,175,020 - +1.4 5,175,020 - -3.6 5,175,020 - -3.6 5,175,027 + -3.9 5,175,028 - +1.5 5,175,028 - +1.4 5,175,068 - -1.1 5,175,074 + -2.3 5,175,090 + +2.2 5,175,090 + -3.0 5,175,090 + +0.0 5,175,090 + -3.4 5,175,090 + +0.3 5,175,091 - -3.6 5,175,091 - -0.6 5,175,091 - -0.5 5,175,091 - -1.7 5,175,092 + -3.2 5,175,092 + +1.0 5,175,092 + +0.7 5,175,092 + -0.2 5,175,093 - +2.1 5,175,093 - -2.4 5,175,093 - -2.0 5,175,093 - -1.4 5,175,125 + -2.0 5,175,126 - +0.8 5,175,126 - +1.1 5,175,126 - -4.2 5,175,161 + -0.4 5,175,161 + -3.0 5,175,161 + +1.5 5,175,162 - -3.7 5,175,162 - -0.1 5,175,162 - +0.5 5,175,162 - -4.5 5,175,246 + -2.6 5,175,250 + +0.4 5,175,250 + +0.7 5,175,250 + -4.2 5,175,250 + -0.6 5,175,250 + -3.8 5,175,250 + +0.9 5,175,251 - +0.8 5,175,251 - -3.2 5,175,251 - -1.4 5,175,251 - +1.5 5,175,251 - +0.4 5,175,277 + -3.0 5,175,277 + +0.6 5,175,277 + -0.5 5,175,547 - PP_4551 0.37 -0.3 5,175,547 - PP_4551 0.37 +0.6 5,175,547 - PP_4551 0.37 -0.1 5,175,561 + PP_4551 0.38 -3.4 5,175,561 + PP_4551 0.38 -3.9 5,175,616 - PP_4551 0.44 -2.6 5,175,616 - PP_4551 0.44 -0.9 5,175,616 - PP_4551 0.44 +0.0 5,175,798 + PP_4551 0.63 -3.8 5,176,012 + PP_4551 0.86 -2.2 5,176,012 + PP_4551 0.86 +0.1 5,176,012 + PP_4551 0.86 -3.3 5,176,012 + PP_4551 0.86 -1.5 5,176,012 + PP_4551 0.86 -2.9 5,176,013 - PP_4551 0.86 -1.4 5,176,013 - PP_4551 0.86 -1.2 5,176,013 - PP_4551 0.86 +1.3 5,176,013 - PP_4551 0.86 -0.7 5,176,013 - PP_4551 0.86 -1.6 5,176,013 - PP_4551 0.86 -1.7 5,176,013 - PP_4551 0.86 -0.9 5,176,013 - PP_4551 0.86 +0.5 5,176,013 - PP_4551 0.86 +2.6 5,176,026 + PP_4551 0.88 -3.2 5,176,048 + +1.1 5,176,712 + +0.7 5,176,794 - -3.4 5,176,913 - PP_4553 0.12 -0.2 5,176,913 - PP_4553 0.12 -3.2 5,176,913 - PP_4553 0.12 +0.9 5,177,047 + PP_4553 0.23 -3.9 5,177,048 - PP_4553 0.23 -1.9 5,177,048 - PP_4553 0.23 -0.0 5,177,048 - PP_4553 0.23 +0.1 5,177,129 + PP_4553 0.30 -3.2 5,177,130 - PP_4553 0.30 -3.6 5,177,131 + PP_4553 0.30 -0.5 5,177,131 + PP_4553 0.30 +1.3 5,177,131 + PP_4553 0.30 +2.1 5,177,132 - PP_4553 0.30 -0.2 5,177,132 - PP_4553 0.30 +0.9
Or see this region's nucleotide sequence