Experiment: Growth at pH7 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4537 and PP_4538 are separated by 255 nucleotides PP_4538 and PP_5698 are separated by 111 nucleotides PP_5698 and PP_4539 are separated by 48 nucleotides
PP_4537: PP_4537 - conserved membrane protein of unknown function, at 5,153,337 to 5,154,212
_4537
PP_4538: PP_4538 - FMN-dependent NADH-azoreductase 2, at 5,154,468 to 5,155,067
_4538
PP_5698: PP_5698 - conserved exported protein of unknown function, at 5,155,179 to 5,155,493
_5698
PP_4539: PP_4539 - Transcriptional regulator, LysR family, at 5,155,542 to 5,156,465
_4539
Position (kb) 5154
5155
5156 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5153.551 kb on + strand, within PP_4537 at 5153.552 kb on - strand, within PP_4537 at 5153.631 kb on - strand, within PP_4537 at 5153.680 kb on + strand, within PP_4537 at 5153.680 kb on + strand, within PP_4537 at 5153.680 kb on + strand, within PP_4537 at 5153.686 kb on + strand, within PP_4537 at 5153.687 kb on - strand, within PP_4537 at 5153.702 kb on - strand, within PP_4537 at 5153.702 kb on - strand, within PP_4537 at 5153.702 kb on - strand, within PP_4537 at 5153.743 kb on + strand, within PP_4537 at 5153.744 kb on - strand, within PP_4537 at 5153.764 kb on + strand, within PP_4537 at 5153.764 kb on + strand, within PP_4537 at 5153.925 kb on + strand, within PP_4537 at 5153.925 kb on + strand, within PP_4537 at 5153.998 kb on + strand, within PP_4537 at 5153.998 kb on + strand, within PP_4537 at 5153.998 kb on + strand at 5153.998 kb on + strand, within PP_4537 at 5153.998 kb on + strand, within PP_4537 at 5153.998 kb on + strand, within PP_4537 at 5153.998 kb on + strand, within PP_4537 at 5153.998 kb on + strand, within PP_4537 at 5153.998 kb on + strand, within PP_4537 at 5153.998 kb on + strand, within PP_4537 at 5153.998 kb on + strand, within PP_4537 at 5153.999 kb on - strand, within PP_4537 at 5153.999 kb on - strand, within PP_4537 at 5153.999 kb on - strand, within PP_4537 at 5153.999 kb on - strand, within PP_4537 at 5153.999 kb on - strand, within PP_4537 at 5153.999 kb on - strand, within PP_4537 at 5153.999 kb on - strand, within PP_4537 at 5153.999 kb on - strand, within PP_4537 at 5154.010 kb on + strand, within PP_4537 at 5154.127 kb on + strand at 5154.128 kb on - strand at 5154.152 kb on - strand at 5154.244 kb on + strand at 5154.282 kb on + strand at 5154.283 kb on - strand at 5154.283 kb on - strand at 5154.335 kb on + strand at 5154.335 kb on + strand at 5154.336 kb on - strand at 5154.336 kb on - strand at 5154.336 kb on - strand at 5154.336 kb on - strand at 5154.336 kb on - strand at 5154.336 kb on - strand at 5154.336 kb on - strand at 5154.353 kb on + strand at 5154.353 kb on + strand at 5154.387 kb on + strand at 5154.403 kb on + strand at 5154.403 kb on + strand at 5154.403 kb on + strand at 5154.403 kb on + strand at 5154.404 kb on - strand at 5154.404 kb on - strand at 5154.404 kb on - strand at 5154.418 kb on + strand at 5154.418 kb on + strand at 5154.601 kb on + strand, within PP_4538 at 5154.601 kb on + strand, within PP_4538 at 5154.602 kb on - strand, within PP_4538 at 5154.602 kb on - strand, within PP_4538 at 5154.602 kb on - strand, within PP_4538 at 5154.706 kb on + strand, within PP_4538 at 5154.707 kb on - strand, within PP_4538 at 5154.707 kb on - strand, within PP_4538 at 5154.707 kb on - strand, within PP_4538 at 5154.707 kb on - strand, within PP_4538 at 5154.707 kb on - strand, within PP_4538 at 5154.778 kb on + strand, within PP_4538 at 5154.779 kb on - strand, within PP_4538 at 5154.801 kb on + strand, within PP_4538 at 5154.933 kb on + strand, within PP_4538 at 5154.933 kb on + strand, within PP_4538 at 5154.934 kb on - strand, within PP_4538 at 5154.934 kb on - strand, within PP_4538 at 5155.118 kb on + strand at 5155.119 kb on - strand at 5155.119 kb on - strand at 5155.119 kb on - strand at 5155.137 kb on - strand at 5155.257 kb on - strand, within PP_5698 at 5155.343 kb on - strand, within PP_5698 at 5155.343 kb on - strand, within PP_5698 at 5155.343 kb on - strand, within PP_5698 at 5155.373 kb on - strand, within PP_5698 at 5155.393 kb on + strand, within PP_5698 at 5155.393 kb on + strand, within PP_5698 at 5155.393 kb on + strand, within PP_5698 at 5155.438 kb on + strand, within PP_5698 at 5155.471 kb on - strand at 5155.522 kb on + strand at 5155.523 kb on - strand at 5155.559 kb on - strand at 5155.656 kb on + strand, within PP_4539 at 5155.656 kb on + strand, within PP_4539 at 5155.656 kb on + strand, within PP_4539 at 5155.657 kb on - strand, within PP_4539 at 5155.998 kb on + strand, within PP_4539 at 5155.998 kb on + strand, within PP_4539 at 5155.999 kb on - strand, within PP_4539 at 5155.999 kb on - strand, within PP_4539 at 5155.999 kb on - strand, within PP_4539 at 5155.999 kb on - strand, within PP_4539 at 5155.999 kb on - strand, within PP_4539 at 5155.999 kb on - strand, within PP_4539 at 5156.013 kb on + strand, within PP_4539
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH7 and (C) D-Glucose remove 5,153,551 + PP_4537 0.24 -3.6 5,153,552 - PP_4537 0.25 +0.6 5,153,631 - PP_4537 0.34 +0.9 5,153,680 + PP_4537 0.39 +1.0 5,153,680 + PP_4537 0.39 -0.9 5,153,680 + PP_4537 0.39 +1.3 5,153,686 + PP_4537 0.40 -0.3 5,153,687 - PP_4537 0.40 +1.3 5,153,702 - PP_4537 0.42 +0.6 5,153,702 - PP_4537 0.42 +0.9 5,153,702 - PP_4537 0.42 -1.3 5,153,743 + PP_4537 0.46 -2.3 5,153,744 - PP_4537 0.46 +1.1 5,153,764 + PP_4537 0.49 -3.3 5,153,764 + PP_4537 0.49 +0.3 5,153,925 + PP_4537 0.67 -0.1 5,153,925 + PP_4537 0.67 +0.9 5,153,998 + PP_4537 0.75 +0.7 5,153,998 + PP_4537 0.75 +0.3 5,153,998 + -0.3 5,153,998 + PP_4537 0.75 -2.6 5,153,998 + PP_4537 0.75 +0.4 5,153,998 + PP_4537 0.75 +1.0 5,153,998 + PP_4537 0.75 -3.5 5,153,998 + PP_4537 0.75 -1.3 5,153,998 + PP_4537 0.75 -2.3 5,153,998 + PP_4537 0.75 -3.9 5,153,998 + PP_4537 0.75 -2.7 5,153,999 - PP_4537 0.76 -4.6 5,153,999 - PP_4537 0.76 -3.4 5,153,999 - PP_4537 0.76 -0.3 5,153,999 - PP_4537 0.76 +0.9 5,153,999 - PP_4537 0.76 -0.4 5,153,999 - PP_4537 0.76 +0.1 5,153,999 - PP_4537 0.76 -2.6 5,153,999 - PP_4537 0.76 -3.2 5,154,010 + PP_4537 0.77 +0.8 5,154,127 + +1.6 5,154,128 - -3.7 5,154,152 - -3.3 5,154,244 + -0.8 5,154,282 + -0.3 5,154,283 - -3.5 5,154,283 - +0.9 5,154,335 + +1.1 5,154,335 + +0.4 5,154,336 - +2.2 5,154,336 - +0.5 5,154,336 - +0.5 5,154,336 - +0.1 5,154,336 - -3.8 5,154,336 - -1.2 5,154,336 - -3.3 5,154,353 + +0.6 5,154,353 + -3.8 5,154,387 + +2.5 5,154,403 + -0.2 5,154,403 + -3.1 5,154,403 + +1.5 5,154,403 + -0.4 5,154,404 - -1.0 5,154,404 - -2.0 5,154,404 - +1.0 5,154,418 + -3.8 5,154,418 + +1.4 5,154,601 + PP_4538 0.22 +0.3 5,154,601 + PP_4538 0.22 -3.5 5,154,602 - PP_4538 0.22 -1.5 5,154,602 - PP_4538 0.22 -0.8 5,154,602 - PP_4538 0.22 -2.7 5,154,706 + PP_4538 0.40 +0.2 5,154,707 - PP_4538 0.40 -3.6 5,154,707 - PP_4538 0.40 -3.4 5,154,707 - PP_4538 0.40 -1.4 5,154,707 - PP_4538 0.40 -3.1 5,154,707 - PP_4538 0.40 -2.0 5,154,778 + PP_4538 0.52 -0.3 5,154,779 - PP_4538 0.52 +0.6 5,154,801 + PP_4538 0.56 +0.8 5,154,933 + PP_4538 0.78 -0.3 5,154,933 + PP_4538 0.78 -3.7 5,154,934 - PP_4538 0.78 -0.6 5,154,934 - PP_4538 0.78 -2.1 5,155,118 + -1.6 5,155,119 - +0.8 5,155,119 - +2.0 5,155,119 - -0.3 5,155,137 - +1.5 5,155,257 - PP_5698 0.25 +1.2 5,155,343 - PP_5698 0.52 +0.8 5,155,343 - PP_5698 0.52 -3.8 5,155,343 - PP_5698 0.52 -0.6 5,155,373 - PP_5698 0.62 -0.8 5,155,393 + PP_5698 0.68 +0.7 5,155,393 + PP_5698 0.68 +0.4 5,155,393 + PP_5698 0.68 +1.5 5,155,438 + PP_5698 0.82 +1.8 5,155,471 - -3.2 5,155,522 + +0.7 5,155,523 - +0.9 5,155,559 - -2.0 5,155,656 + PP_4539 0.12 +0.1 5,155,656 + PP_4539 0.12 -2.6 5,155,656 + PP_4539 0.12 +0.6 5,155,657 - PP_4539 0.12 +1.1 5,155,998 + PP_4539 0.49 -3.1 5,155,998 + PP_4539 0.49 +2.3 5,155,999 - PP_4539 0.49 -0.9 5,155,999 - PP_4539 0.49 +0.8 5,155,999 - PP_4539 0.49 -3.5 5,155,999 - PP_4539 0.49 +1.2 5,155,999 - PP_4539 0.49 -2.7 5,155,999 - PP_4539 0.49 -2.7 5,156,013 + PP_4539 0.51 +1.5
Or see this region's nucleotide sequence