Experiment: Growth at pH7 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4084 and PP_4085 are separated by 53 nucleotides PP_4085 and PP_5652 are separated by 23 nucleotides
PP_4084: PP_4084 - conserved protein of unknown function, at 4,613,145 to 4,613,576
_4084
PP_4085: PP_4085 - putative RHS family protein, at 4,613,630 to 4,618,222
_4085
PP_5652: PP_5652 - conserved protein of unknown function, phage origin, at 4,618,246 to 4,618,731
_5652
Position (kb) 4613
4614
4615
4616
4617
4618
4619 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4612.855 kb on + strand at 4612.855 kb on + strand at 4612.880 kb on + strand at 4613.137 kb on + strand at 4613.138 kb on - strand at 4613.170 kb on + strand at 4613.170 kb on + strand at 4613.170 kb on + strand at 4613.171 kb on - strand at 4613.171 kb on - strand at 4613.318 kb on - strand, within PP_4084 at 4613.320 kb on + strand, within PP_4084 at 4613.348 kb on + strand, within PP_4084 at 4613.499 kb on + strand, within PP_4084 at 4613.499 kb on + strand, within PP_4084 at 4613.500 kb on - strand, within PP_4084 at 4613.614 kb on + strand at 4613.723 kb on - strand at 4613.723 kb on - strand at 4613.723 kb on - strand at 4613.726 kb on + strand at 4613.726 kb on + strand at 4613.726 kb on + strand at 4613.726 kb on + strand at 4613.726 kb on + strand at 4613.726 kb on + strand at 4613.726 kb on + strand at 4613.727 kb on - strand at 4613.727 kb on - strand at 4613.981 kb on - strand at 4614.107 kb on + strand, within PP_4085 at 4614.107 kb on + strand, within PP_4085 at 4614.107 kb on + strand, within PP_4085 at 4614.107 kb on + strand, within PP_4085 at 4614.108 kb on - strand, within PP_4085 at 4614.141 kb on + strand, within PP_4085 at 4614.141 kb on + strand, within PP_4085 at 4614.141 kb on + strand, within PP_4085 at 4614.142 kb on - strand, within PP_4085 at 4614.142 kb on - strand, within PP_4085 at 4614.142 kb on - strand, within PP_4085 at 4614.142 kb on - strand, within PP_4085 at 4614.142 kb on - strand, within PP_4085 at 4614.273 kb on + strand, within PP_4085 at 4614.273 kb on + strand, within PP_4085 at 4614.273 kb on + strand, within PP_4085 at 4614.273 kb on + strand, within PP_4085 at 4614.273 kb on + strand, within PP_4085 at 4614.273 kb on + strand, within PP_4085 at 4614.273 kb on + strand, within PP_4085 at 4614.274 kb on - strand, within PP_4085 at 4614.274 kb on - strand, within PP_4085 at 4614.274 kb on - strand, within PP_4085 at 4614.351 kb on + strand, within PP_4085 at 4614.430 kb on + strand, within PP_4085 at 4614.440 kb on - strand, within PP_4085 at 4614.454 kb on + strand, within PP_4085 at 4614.454 kb on + strand, within PP_4085 at 4614.455 kb on - strand, within PP_4085 at 4614.455 kb on - strand, within PP_4085 at 4614.492 kb on + strand, within PP_4085 at 4614.493 kb on - strand, within PP_4085 at 4614.493 kb on - strand, within PP_4085 at 4614.596 kb on + strand, within PP_4085 at 4614.597 kb on - strand, within PP_4085 at 4614.628 kb on - strand, within PP_4085 at 4614.628 kb on - strand, within PP_4085 at 4614.694 kb on + strand, within PP_4085 at 4614.694 kb on + strand, within PP_4085 at 4614.707 kb on + strand, within PP_4085 at 4614.708 kb on - strand, within PP_4085 at 4614.830 kb on - strand, within PP_4085 at 4614.830 kb on - strand, within PP_4085 at 4614.846 kb on - strand, within PP_4085 at 4614.965 kb on + strand, within PP_4085 at 4614.965 kb on + strand, within PP_4085 at 4614.966 kb on - strand, within PP_4085 at 4614.974 kb on + strand, within PP_4085 at 4614.975 kb on - strand, within PP_4085 at 4614.975 kb on - strand, within PP_4085 at 4614.975 kb on - strand, within PP_4085 at 4614.975 kb on - strand, within PP_4085 at 4615.001 kb on + strand, within PP_4085 at 4615.002 kb on - strand, within PP_4085 at 4615.002 kb on - strand, within PP_4085 at 4615.036 kb on - strand, within PP_4085 at 4615.036 kb on - strand, within PP_4085 at 4615.070 kb on - strand, within PP_4085 at 4615.070 kb on - strand, within PP_4085 at 4615.074 kb on + strand, within PP_4085 at 4615.075 kb on - strand, within PP_4085 at 4615.075 kb on - strand, within PP_4085 at 4615.075 kb on - strand, within PP_4085 at 4615.100 kb on + strand, within PP_4085 at 4615.101 kb on - strand, within PP_4085 at 4615.107 kb on - strand, within PP_4085 at 4615.135 kb on - strand, within PP_4085 at 4615.135 kb on - strand, within PP_4085 at 4615.172 kb on + strand, within PP_4085 at 4615.172 kb on + strand, within PP_4085 at 4615.172 kb on + strand, within PP_4085 at 4615.172 kb on + strand, within PP_4085 at 4615.172 kb on + strand, within PP_4085 at 4615.172 kb on + strand, within PP_4085 at 4615.172 kb on + strand, within PP_4085 at 4615.172 kb on + strand, within PP_4085 at 4615.172 kb on + strand, within PP_4085 at 4615.173 kb on - strand, within PP_4085 at 4615.173 kb on - strand, within PP_4085 at 4615.173 kb on - strand, within PP_4085 at 4615.188 kb on - strand, within PP_4085 at 4615.196 kb on - strand, within PP_4085 at 4615.230 kb on - strand, within PP_4085 at 4615.268 kb on - strand, within PP_4085 at 4615.377 kb on - strand, within PP_4085 at 4615.389 kb on - strand at 4615.445 kb on + strand, within PP_4085 at 4615.445 kb on + strand, within PP_4085 at 4615.445 kb on + strand, within PP_4085 at 4615.446 kb on - strand, within PP_4085 at 4615.446 kb on - strand, within PP_4085 at 4615.448 kb on + strand, within PP_4085 at 4615.448 kb on + strand, within PP_4085 at 4615.448 kb on + strand, within PP_4085 at 4615.449 kb on - strand, within PP_4085 at 4615.449 kb on - strand, within PP_4085 at 4615.449 kb on - strand, within PP_4085 at 4615.449 kb on - strand, within PP_4085 at 4615.472 kb on + strand, within PP_4085 at 4615.472 kb on + strand, within PP_4085 at 4615.472 kb on + strand, within PP_4085 at 4615.472 kb on + strand, within PP_4085 at 4615.473 kb on - strand, within PP_4085 at 4615.473 kb on - strand at 4615.474 kb on + strand, within PP_4085 at 4615.475 kb on - strand, within PP_4085 at 4615.475 kb on - strand, within PP_4085 at 4615.475 kb on - strand, within PP_4085 at 4615.569 kb on - strand, within PP_4085 at 4616.441 kb on + strand, within PP_4085 at 4616.646 kb on - strand, within PP_4085 at 4616.646 kb on - strand, within PP_4085 at 4616.646 kb on - strand, within PP_4085 at 4616.649 kb on - strand, within PP_4085 at 4616.889 kb on + strand, within PP_4085 at 4617.023 kb on + strand, within PP_4085 at 4617.173 kb on + strand, within PP_4085 at 4617.249 kb on - strand, within PP_4085 at 4617.377 kb on + strand, within PP_4085 at 4617.455 kb on - strand, within PP_4085 at 4617.455 kb on - strand, within PP_4085 at 4617.461 kb on + strand, within PP_4085 at 4617.461 kb on + strand, within PP_4085 at 4617.461 kb on + strand, within PP_4085 at 4617.461 kb on + strand, within PP_4085 at 4617.461 kb on + strand, within PP_4085 at 4617.462 kb on - strand, within PP_4085 at 4617.462 kb on - strand, within PP_4085 at 4617.462 kb on - strand, within PP_4085 at 4617.462 kb on - strand, within PP_4085 at 4617.462 kb on - strand, within PP_4085 at 4617.462 kb on - strand, within PP_4085 at 4617.462 kb on - strand, within PP_4085 at 4617.462 kb on - strand, within PP_4085 at 4617.462 kb on - strand, within PP_4085 at 4617.462 kb on - strand, within PP_4085 at 4617.462 kb on - strand, within PP_4085 at 4617.462 kb on - strand, within PP_4085 at 4617.462 kb on - strand, within PP_4085 at 4617.462 kb on - strand, within PP_4085 at 4617.462 kb on - strand, within PP_4085 at 4617.467 kb on + strand, within PP_4085 at 4617.467 kb on + strand, within PP_4085 at 4617.468 kb on - strand, within PP_4085 at 4617.468 kb on - strand, within PP_4085 at 4617.485 kb on + strand, within PP_4085 at 4617.485 kb on + strand, within PP_4085 at 4617.485 kb on + strand, within PP_4085 at 4617.485 kb on + strand, within PP_4085 at 4617.486 kb on - strand, within PP_4085 at 4617.486 kb on - strand, within PP_4085 at 4617.486 kb on - strand, within PP_4085 at 4617.511 kb on + strand, within PP_4085 at 4617.536 kb on + strand, within PP_4085 at 4617.536 kb on + strand, within PP_4085 at 4617.605 kb on - strand, within PP_4085 at 4617.631 kb on - strand, within PP_4085 at 4617.634 kb on + strand, within PP_4085 at 4617.634 kb on + strand, within PP_4085 at 4617.634 kb on + strand, within PP_4085 at 4617.634 kb on + strand, within PP_4085 at 4617.635 kb on - strand, within PP_4085 at 4617.692 kb on + strand, within PP_4085 at 4617.714 kb on + strand, within PP_4085 at 4617.724 kb on + strand, within PP_4085 at 4617.751 kb on - strand, within PP_4085 at 4617.821 kb on - strand at 4617.821 kb on - strand at 4617.830 kb on + strand at 4617.830 kb on + strand at 4617.831 kb on - strand at 4617.873 kb on - strand at 4617.877 kb on + strand at 4617.878 kb on - strand at 4617.878 kb on - strand at 4617.888 kb on - strand at 4617.930 kb on + strand at 4617.931 kb on - strand at 4617.931 kb on - strand at 4617.931 kb on - strand at 4617.931 kb on - strand at 4617.931 kb on - strand at 4617.963 kb on - strand at 4617.963 kb on - strand at 4617.975 kb on - strand at 4617.991 kb on + strand at 4618.007 kb on - strand at 4618.037 kb on + strand at 4618.037 kb on + strand at 4618.050 kb on + strand at 4618.051 kb on - strand at 4618.178 kb on + strand at 4618.182 kb on - strand at 4618.196 kb on - strand at 4618.257 kb on - strand at 4618.417 kb on - strand, within PP_5652 at 4618.560 kb on - strand, within PP_5652 at 4618.560 kb on - strand, within PP_5652 at 4618.824 kb on + strand at 4618.824 kb on + strand at 4618.824 kb on + strand at 4618.825 kb on - strand at 4618.827 kb on - strand at 4619.058 kb on - strand at 4619.088 kb on + strand at 4619.088 kb on + strand at 4619.089 kb on - strand at 4619.090 kb on + strand at 4619.138 kb on + strand at 4619.212 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH7 and (C) D-Glucose remove 4,612,855 + +0.7 4,612,855 + -3.6 4,612,880 + +0.9 4,613,137 + -3.0 4,613,138 - -3.0 4,613,170 + +0.6 4,613,170 + +1.3 4,613,170 + -1.8 4,613,171 - +1.0 4,613,171 - -0.9 4,613,318 - PP_4084 0.40 +0.6 4,613,320 + PP_4084 0.41 -0.8 4,613,348 + PP_4084 0.47 +0.5 4,613,499 + PP_4084 0.82 +2.0 4,613,499 + PP_4084 0.82 -2.0 4,613,500 - PP_4084 0.82 +0.8 4,613,614 + +1.0 4,613,723 - +1.4 4,613,723 - +1.7 4,613,723 - -1.5 4,613,726 + -0.0 4,613,726 + +0.8 4,613,726 + +1.5 4,613,726 + +1.5 4,613,726 + +2.2 4,613,726 + -0.5 4,613,726 + +1.8 4,613,727 - +3.1 4,613,727 - -2.5 4,613,981 - +0.9 4,614,107 + PP_4085 0.10 +1.0 4,614,107 + PP_4085 0.10 +2.0 4,614,107 + PP_4085 0.10 -4.0 4,614,107 + PP_4085 0.10 -3.7 4,614,108 - PP_4085 0.10 +1.1 4,614,141 + PP_4085 0.11 -0.2 4,614,141 + PP_4085 0.11 -0.8 4,614,141 + PP_4085 0.11 -4.0 4,614,142 - PP_4085 0.11 +0.7 4,614,142 - PP_4085 0.11 -3.4 4,614,142 - PP_4085 0.11 +0.3 4,614,142 - PP_4085 0.11 -1.2 4,614,142 - PP_4085 0.11 +0.6 4,614,273 + PP_4085 0.14 +0.1 4,614,273 + PP_4085 0.14 +1.5 4,614,273 + PP_4085 0.14 -3.8 4,614,273 + PP_4085 0.14 -2.7 4,614,273 + PP_4085 0.14 -2.5 4,614,273 + PP_4085 0.14 -3.9 4,614,273 + PP_4085 0.14 -0.3 4,614,274 - PP_4085 0.14 -3.9 4,614,274 - PP_4085 0.14 -3.5 4,614,274 - PP_4085 0.14 +0.9 4,614,351 + PP_4085 0.16 +1.5 4,614,430 + PP_4085 0.17 -2.5 4,614,440 - PP_4085 0.18 -2.9 4,614,454 + PP_4085 0.18 -2.0 4,614,454 + PP_4085 0.18 +0.9 4,614,455 - PP_4085 0.18 -0.3 4,614,455 - PP_4085 0.18 -0.7 4,614,492 + PP_4085 0.19 +1.2 4,614,493 - PP_4085 0.19 +0.4 4,614,493 - PP_4085 0.19 -4.3 4,614,596 + PP_4085 0.21 +0.5 4,614,597 - PP_4085 0.21 -0.2 4,614,628 - PP_4085 0.22 +1.2 4,614,628 - PP_4085 0.22 -1.3 4,614,694 + PP_4085 0.23 -3.4 4,614,694 + PP_4085 0.23 -3.2 4,614,707 + PP_4085 0.23 +1.2 4,614,708 - PP_4085 0.23 -3.4 4,614,830 - PP_4085 0.26 +1.1 4,614,830 - PP_4085 0.26 +0.7 4,614,846 - PP_4085 0.26 +1.4 4,614,965 + PP_4085 0.29 -3.7 4,614,965 + PP_4085 0.29 +1.4 4,614,966 - PP_4085 0.29 -3.3 4,614,974 + PP_4085 0.29 +0.5 4,614,975 - PP_4085 0.29 -1.1 4,614,975 - PP_4085 0.29 -4.5 4,614,975 - PP_4085 0.29 +1.3 4,614,975 - PP_4085 0.29 -2.3 4,615,001 + PP_4085 0.30 -1.2 4,615,002 - PP_4085 0.30 -3.7 4,615,002 - PP_4085 0.30 +0.4 4,615,036 - PP_4085 0.31 -1.8 4,615,036 - PP_4085 0.31 +1.0 4,615,070 - PP_4085 0.31 -0.3 4,615,070 - PP_4085 0.31 -0.7 4,615,074 + PP_4085 0.31 +0.7 4,615,075 - PP_4085 0.31 -0.9 4,615,075 - PP_4085 0.31 +2.8 4,615,075 - PP_4085 0.31 -4.5 4,615,100 + PP_4085 0.32 +1.6 4,615,101 - PP_4085 0.32 +1.3 4,615,107 - PP_4085 0.32 -0.4 4,615,135 - PP_4085 0.33 -1.8 4,615,135 - PP_4085 0.33 -4.0 4,615,172 + PP_4085 0.34 +0.4 4,615,172 + PP_4085 0.34 -0.6 4,615,172 + PP_4085 0.34 +2.5 4,615,172 + PP_4085 0.34 -0.7 4,615,172 + PP_4085 0.34 +0.8 4,615,172 + PP_4085 0.34 +1.6 4,615,172 + PP_4085 0.34 +0.8 4,615,172 + PP_4085 0.34 +0.2 4,615,172 + PP_4085 0.34 +1.1 4,615,173 - PP_4085 0.34 -1.3 4,615,173 - PP_4085 0.34 -1.7 4,615,173 - PP_4085 0.34 +0.4 4,615,188 - PP_4085 0.34 +0.4 4,615,196 - PP_4085 0.34 -3.8 4,615,230 - PP_4085 0.35 -0.9 4,615,268 - PP_4085 0.36 -3.4 4,615,377 - PP_4085 0.38 -1.3 4,615,389 - +0.3 4,615,445 + PP_4085 0.40 +0.7 4,615,445 + PP_4085 0.40 -0.7 4,615,445 + PP_4085 0.40 -3.4 4,615,446 - PP_4085 0.40 +0.1 4,615,446 - PP_4085 0.40 -1.1 4,615,448 + PP_4085 0.40 -0.6 4,615,448 + PP_4085 0.40 +0.2 4,615,448 + PP_4085 0.40 +2.7 4,615,449 - PP_4085 0.40 -2.5 4,615,449 - PP_4085 0.40 +1.2 4,615,449 - PP_4085 0.40 -4.1 4,615,449 - PP_4085 0.40 -3.0 4,615,472 + PP_4085 0.40 +0.3 4,615,472 + PP_4085 0.40 -2.3 4,615,472 + PP_4085 0.40 -1.4 4,615,472 + PP_4085 0.40 +0.8 4,615,473 - PP_4085 0.40 +1.1 4,615,473 - +2.2 4,615,474 + PP_4085 0.40 +0.4 4,615,475 - PP_4085 0.40 -2.1 4,615,475 - PP_4085 0.40 -3.4 4,615,475 - PP_4085 0.40 -3.6 4,615,569 - PP_4085 0.42 -0.3 4,616,441 + PP_4085 0.61 -3.6 4,616,646 - PP_4085 0.66 -0.5 4,616,646 - PP_4085 0.66 -1.5 4,616,646 - PP_4085 0.66 +1.2 4,616,649 - PP_4085 0.66 +1.1 4,616,889 + PP_4085 0.71 -2.8 4,617,023 + PP_4085 0.74 -0.2 4,617,173 + PP_4085 0.77 -3.9 4,617,249 - PP_4085 0.79 +1.9 4,617,377 + PP_4085 0.82 +1.4 4,617,455 - PP_4085 0.83 +0.5 4,617,455 - PP_4085 0.83 -2.9 4,617,461 + PP_4085 0.83 +0.4 4,617,461 + PP_4085 0.83 -0.2 4,617,461 + PP_4085 0.83 -1.4 4,617,461 + PP_4085 0.83 -0.4 4,617,461 + PP_4085 0.83 -4.5 4,617,462 - PP_4085 0.83 +0.7 4,617,462 - PP_4085 0.83 +1.7 4,617,462 - PP_4085 0.83 -0.8 4,617,462 - PP_4085 0.83 -0.8 4,617,462 - PP_4085 0.83 +1.0 4,617,462 - PP_4085 0.83 +1.4 4,617,462 - PP_4085 0.83 +0.2 4,617,462 - PP_4085 0.83 -2.4 4,617,462 - PP_4085 0.83 -2.0 4,617,462 - PP_4085 0.83 -4.2 4,617,462 - PP_4085 0.83 +0.7 4,617,462 - PP_4085 0.83 +0.9 4,617,462 - PP_4085 0.83 -0.4 4,617,462 - PP_4085 0.83 +0.6 4,617,462 - PP_4085 0.83 +1.9 4,617,467 + PP_4085 0.84 -3.8 4,617,467 + PP_4085 0.84 +0.2 4,617,468 - PP_4085 0.84 +1.3 4,617,468 - PP_4085 0.84 +0.9 4,617,485 + PP_4085 0.84 -2.4 4,617,485 + PP_4085 0.84 +0.1 4,617,485 + PP_4085 0.84 -4.4 4,617,485 + PP_4085 0.84 -1.9 4,617,486 - PP_4085 0.84 +0.8 4,617,486 - PP_4085 0.84 -0.5 4,617,486 - PP_4085 0.84 -0.5 4,617,511 + PP_4085 0.84 -3.3 4,617,536 + PP_4085 0.85 +1.2 4,617,536 + PP_4085 0.85 +0.3 4,617,605 - PP_4085 0.87 +1.0 4,617,631 - PP_4085 0.87 +0.6 4,617,634 + PP_4085 0.87 -2.0 4,617,634 + PP_4085 0.87 -1.3 4,617,634 + PP_4085 0.87 +0.6 4,617,634 + PP_4085 0.87 +0.6 4,617,635 - PP_4085 0.87 -0.4 4,617,692 + PP_4085 0.88 -2.3 4,617,714 + PP_4085 0.89 +0.8 4,617,724 + PP_4085 0.89 +0.3 4,617,751 - PP_4085 0.90 -3.4 4,617,821 - +0.2 4,617,821 - -3.8 4,617,830 + -0.8 4,617,830 + -2.2 4,617,831 - -4.4 4,617,873 - -3.7 4,617,877 + -0.7 4,617,878 - +1.6 4,617,878 - +0.0 4,617,888 - +2.3 4,617,930 + +0.5 4,617,931 - +1.4 4,617,931 - -3.5 4,617,931 - +2.4 4,617,931 - -2.5 4,617,931 - -1.0 4,617,963 - -2.9 4,617,963 - -0.5 4,617,975 - +1.8 4,617,991 + +2.2 4,618,007 - -0.4 4,618,037 + -4.0 4,618,037 + -1.1 4,618,050 + +0.2 4,618,051 - +1.6 4,618,178 + -2.5 4,618,182 - -0.7 4,618,196 - -0.8 4,618,257 - +0.4 4,618,417 - PP_5652 0.35 -0.5 4,618,560 - PP_5652 0.65 -0.7 4,618,560 - PP_5652 0.65 -2.0 4,618,824 + -0.3 4,618,824 + -2.0 4,618,824 + -3.7 4,618,825 - -0.4 4,618,827 - -3.4 4,619,058 - -1.3 4,619,088 + -0.3 4,619,088 + -3.1 4,619,089 - -4.1 4,619,090 + +1.2 4,619,138 + +0.7 4,619,212 + -2.7
Or see this region's nucleotide sequence